symsim specifications

Information


Unique identifier OMICS_23380
Name symsim
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages MATLAB
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainers


  • person_outline Eric Alm <>
  • person_outline Jesse Shapiro <>
  • person_outline Jesse Shapiro <>

Publication for symsim

symsim in publication

PMCID: 4673824
PMID: 26592443
DOI: 10.1038/ncomms9924

[…] can take the adapted state 1 or alternatively any other positive integer for non-adapted cells. we simulate the ecological competition of the cells in n different niches in the patch similar to the symsim model by friedman et al.. each cell obtains resources from an assigned niche and from the remaining niches as well. thus, for a given cell i there is a vector of length n giving the cell's […]


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symsim institution(s)
Program in Computational and Systems Biology, Massachusetts Institute of Technology, Cambridge, MA, USA; Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA; Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA; Broad Institute, Cambridge, MA, USA; Center for Communicable Disease Dynamics, Harvard School of Public Health, Boston, MA, USA; Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA, USA
symsim funding source(s)
Supported by the National Science Foundation (NSF Grant DEB-0918333); NSF Grant 0821391; NSERC Canada Graduate Scholarship and a Harvard MIDAS Center for Communicable Disease Dynamics postdoctoral fellowship.

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