Synapter specifications


Unique identifier OMICS_31574
Name Synapter
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Medium
Version 2.5.2
Stability Stable
methods, MSnbase
Maintained Yes




No version available



  • person_outline Laurent Gatto

Publications for Synapter

Synapter citation


Enhanced differential expression statistics for data independent acquisition proteomics

Sci Rep
PMCID: 5517573
PMID: 28724900
DOI: 10.1038/s41598-017-05949-y

[…] We also used data from Kuharev et al. for benchmarking differential expression in DIA data. The data was originally used for testing three different software packages (ISOQuant, Progenesis and Synapter) for processing MSE  and UDMSE  DIA data. The data consists of two hybrid proteome samples of known composition, both with five technical replicates. The samples contain human, yeast and E. […]

Synapter institution(s)
Cambridge Centre for Proteomics, Department of Biochemistry, University of Cambridge, Cambridge, UK
Synapter funding source(s)
Supported by a seventh Framework Programme of the European Union (262067- PRIME-XS) and by The Darwin Trust of Edinburgh.

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