SynBrowse pipeline

SynBrowse specifications


Unique identifier OMICS_00946
Name SynBrowse
Alternative name Synteny Browser
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Medium
Stability No
Maintained No


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Publication for Synteny Browser

SynBrowse IN pipeline

PMCID: 3303823
PMID: 22432010
DOI: 10.1371/journal.pone.0033280

[…] orfs were clustered using the mcl algorithm [212]. within each homolog cluster, orthologs were distinguished from paralogs by visual inspection of gene orders displayed by the authors' unpublished synteny browser and by matrix comparison with dna strider [135]. percent identity of dna and protein sequences was calculated by dna strider using alignments created by that program. protein multiple […]

SynBrowse institution(s)
Department of Genetics, Development and Cell Biology, Iowa State University, Ames, IA, USA

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