SynBrowse pipeline

SynBrowse specifications

Information


Unique identifier OMICS_00946
Name SynBrowse
Alternative name Synteny Browser
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Medium
Stability No
Maintained No

Versioning


Add your version

Publication for Synteny Browser

SynBrowse IN pipeline

2012
PMCID: 3303823
PMID: 22432010
DOI: 10.1371/journal.pone.0033280

[…] orfs were clustered using the mcl algorithm [212]. within each homolog cluster, orthologs were distinguished from paralogs by visual inspection of gene orders displayed by the authors' unpublished synteny browser and by matrix comparison with dna strider [135]. percent identity of dna and protein sequences was calculated by dna strider using alignments created by that program. protein multiple […]

SynBrowse institution(s)
Department of Genetics, Development and Cell Biology, Iowa State University, Ames, IA, USA

SynBrowse reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review SynBrowse