SPANDx specifications

Unique identifier:
OMICS_17827
Software type:
Package/Module
Restrictions to use:
None
Output format:
nex
Programming languages:
Shell (Bash)
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
Name:
Synergised Pipeline for Analysis of NGS Data in Linux
Interface:
Command line interface
Output data:
P/A matrix and single-nucleotide polymorphism (SNP) matrices.
Operating system:
Unix/Linux
License:
GNU General Public License version 3.0
Version:
3.2
Requirements:
Portable Batch System, Java, Genome Analysis Tool Kit

versioning

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SPANDx distribution

download

SPANDx support

Documentation

Maintainer

  • Derek Sarovich <>

Additional information

GATK needs to be downloaded and installed separately due to Broad Institute licencing restrictions. Commercial users of GATK are required to obtain a licence for use. For further information, see www.appistry.com/ gatk. As of version 3.1, GATK is open source to not-for-profit institutions only. PLINK has not been included in the SPANDx bundle yet, but will be included in future versions.

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Publications

Institution(s)

Global and Tropical Health Division, Menzies School of Health Research, Charles Darwin University, Casuarina, NT, Australia; Child Health Division, Menzies School of Health Research, Charles Darwin University, Casuarina, Darwin, NT, Australia

Funding source(s)

Supported by the Australian National Health and Medical Research Council via award 1046812.

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