Sibelia specifications

Information


Unique identifier OMICS_11719
Name Synteny Block ExpLoration tool
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Sibelia takes a set of FASTA files with genomes.
Output data It locates coordinates of the synteny blocks in these sequences. It also represents genomes as permutations of the blocks.
Operating system Unix/Linux, Mac OS, Windows
License GNU General Public License version 2.0
Computer skills Advanced
Version 3.0.6
Stability Stable
Requirements Ibdivsufsort, TCLAP, Boost, D3.js, Seqan
Maintained Yes

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Maintainer


  • person_outline Nikolay Vyahhi <>

Sibelia article

Sibelia citation

2015
PMCID: 4686347

[…] in the study, were used to reconstruct the evolutionary phylogeny. the whole-genome phylogeny inferred from collinear genomic segments was called lcbs phylogeny. first, lcbs were indentified using sibelia version 3.0.6,32,33 which can efficiently find lcbs among a large number of microbial genomes without alignment. chromosome sequences were compared with parameters “-s loose -q -g -v -t tmp […]

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