SynBrowse specifications

Information


Unique identifier OMICS_00946
Name SynBrowse
Alternative name Synteny Browser
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Medium
Stability Stable
Maintained No

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SynBrowse citations

 (2)
2017
PMCID: 5753386

[…] genomes rapidly diverge at the local sequence level, as well as in their organization. to further explore the conservation of genome organization within deuterostomes, we implemented a genomicus synteny browser (42), based on the refined orthology relationships described above. this tool provides powerful visualization interfaces, such as karyotype view to explore genome organization (figure […]

2012
PMCID: 3303823

[…] orfs were clustered using the mcl algorithm [212]. within each homolog cluster, orthologs were distinguished from paralogs by visual inspection of gene orders displayed by the authors' unpublished synteny browser and by matrix comparison with dna strider [135]. percent identity of dna and protein sequences was calculated by dna strider using alignments created by that program. protein multiple […]

SynBrowse institution(s)
Department of Genetics, Development and Cell Biology, Iowa State University, Ames, IA, USA

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