Synima specifications


Unique identifier OMICS_24380
Name Synteny Imager
Alternative name Synteny Imaging Tool
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A genome file for each isolate of interest, and the predicted chains of orthologs in an aligncoords and aligncoords.spans file.
Input format FASTA+TSV
Output data An Rscript visualising the locations and relationships between chromosomes and genes of each genome.
Output format PDF
Operating system Unix/Linux, Mac OS, Windows
Programming languages Perl, Python
License MIT License
Computer skills Advanced
Stability Stable
Requirements : Bio-Perl, R, Legacy-blast
Maintained Yes



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  • person_outline Rhys Farrer <>

Synima article

Synima institution(s)
Department of Infectious Disease Epidemiology, Imperial College London, London, UK; Department of Genetics, Environment and Evolution, University College London, London, UK
Synima funding source(s)
Supported by an MIT / Wellcome Trust Fellowship.

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