SyMAP specifications

Information


Unique identifier OMICS_11713
Name Synteny Mapping and Analysis Program
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Input format FASTA
Operating system Unix/Linux, Mac OS
Programming languages Java
License GNU General Public License version 3.0
Computer skills Medium
Version 4.2
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline SyMAP Team <>

SyMAP articles

SyMAP citations

 (3)
2017
PMCID: 5741766

[…] new genes uncovered in the new assembled l. infantum genome. the complete annotation of the new genome (gff3 file) is provided in the supplementary fileĀ 1 in excel format., synteny was evaluated via symap45 and progressive mauve46 algorithms using current l. infantum (v.9, genedb.org) and l. major 24 genomes as reference. synteny graphs were prepared by genoplotr47, and provided as supplementary […]

2013
PMCID: 3878662

[…] not assembled completely (tableĀ 4), the numbers of paired-end bess potentially collinear with target genomes could be higher than detected., in order to detect large syntenic regions, we used the symap [23] program based on the bess embedded in the contigs to anchor uv-8b phaseia contigs to the genomes of m. anisopliae, t. reesei, n. haematococca and c. militaris. under the symap default […]

2010
PMCID: 3091759

[…] complete set of bcm bes, the physical map information and the sequences of genetic markers anchored to the map were loaded into the symap v3.1 software package http://www.agcol.arizona.edu/software/symap/ to display areas of synteny between the melon physical map and the sequenced chromosomes of c. sativus., vmg and lrm carried out the trimming, clustering and analysis of the bac-end sequences […]

SyMAP institution(s)
BIO5 Institute, University of Arizona, Tucson, AZ, USA
SyMAP funding source(s)
This project is supported by the National Research Initiative of USDA's National Institute of Food and Agriculture, grant #0214643.

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