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Synthetic biology software tools and databases

Synthetic biology aims to create functional devices, systems and organisms with novel and useful functions on the basis of catalogued and standardized biological building blocks. Although they were initially constructed to elucidate the dynamics of simple processes, designed…

Synthetic biology steps

Bioinformatics tools

Databases

Experts in Synthetic biology

They share and annotate bioinformatics tools

Most recent bioinformatics tools

GST-PRIME
Desktop

GST-PRIME

Allows retrieval and assembly of gene sequences, and design of sets of primer…

Allows retrieval and assembly of gene sequences, and design of sets of primer pairs for gene amplification. GST-PRIME enables users to design a large numbers of primer pairs starting from a list of…

GenoFrag
Desktop

GenoFrag

Designs primers optimized for whole genome polymerase chain reaction (PCR)…

Designs primers optimized for whole genome polymerase chain reaction (PCR) scanning. GenoFrag was designed to allow a broad range of parameter implementations. It can be used for viral genomes, after…

Sequence…
Web
Desktop

Sequence Extractor

Provides a clickable restriction map and polymerase chain reaction (PCR) primer…

Provides a clickable restriction map and polymerase chain reaction (PCR) primer map of a DNA sequence. Sequence Extractor is a web application that was developed to build in silico DNA constructs. It…

savvy
Web

savvy

Provides a high resolution, high print quality and high-resolution plasmid map…

Provides a high resolution, high print quality and high-resolution plasmid map using scalable vector graphics (SVG). savvy is available as a web application.

Most popular analytical software and databases

G T A T C G C T A
Geneious
Desktop

Geneious

Proposes a powerful and comprehensive suite of next generation sequencing (NGS)…

Proposes a powerful and comprehensive suite of next generation sequencing (NGS) analysis tools. Through an intuitive and user-friendly interface, Geneious provides visual sequence alignment and…

Addgene
Dataset

Addgene

Archives plasmids generated by scientists, conducts quality control, annotates…

Archives plasmids generated by scientists, conducts quality control, annotates the associated data and makes the plasmids and their data available to the scientific community. Addgene is a non-profit…

R2oDNA Designer
Desktop

R2oDNA Designer

A web application that stochastically generates orthogonal sets of synthetic…

A web application that stochastically generates orthogonal sets of synthetic DNA sequences designed to be biologically neutral. Biologically neutral sequences may be used for directing efficient DNA…

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