Synthetic biology software tools and databases

Synthetic biology applications

Bioinformatics tools

Databases

Synthetic biology aims to create functional devices, systems and organisms with novel and useful functions on the basis of catalogued and standardized biological building blocks. Although they were initially constructed to elucidate the dynamics of simple processes, designed…

Synthetic biology software tools and databases

Most Recent Tools

Web app
Simulation Experiment… Simulation Experiment Description Markup Language…

SED-ML Web Tools Simulation Experiment Description Markup Language Web Tools

Supports users in generating, modifying, simulating, and exporting standard…

Supports users in generating, modifying, simulating, and exporting standard compliant simulation experiments. SED-ML Web Tools implement all current SED-ML specifications and, thus, support complex…

Desktop app
Validation… Validation Discriminant Analysis

VDA Validation Discriminant Analysis

Minimizes the number of validation experiments necessary for reliable…

Minimizes the number of validation experiments necessary for reliable performance estimation and fair comparison between algorithms through a cost-efficient method. VDA is a method for designing a…

Desktop app
Synthetic Biological… Deprecated Synthetic Biological software based on Google Wave

SynBioWave Synthetic Biological software based on Google Wave

A Google Wave implementation for molecular biologists. SynBioWave aims to unite…

A Google Wave implementation for molecular biologists. SynBioWave aims to unite the stunning possibilities regarding a cooperative workflow of a web application with the comprehensive assortment of…

Desktop app
Gene Inactivation… Gene Inactivation Moderated by Metabolism…

GIM3E Gene Inactivation Moderated by Metabolism Metabolomics and Expression

Enables the development of condition-specific models based on an objective…

Enables the development of condition-specific models based on an objective function, transcriptomics and cellular metabolomics data. GIM3E establishes metabolite use requirements with metabolomics…

Most Popular Tools

Addgene Addgene

Addgene

A non-profit plasmid repository dedicated to helping scientists around the…

A non-profit plasmid repository dedicated to helping scientists around the world share high-quality plasmids. The repository archives plasmids generated by scientists, conducts quality control,…

Curators for Synthetic biology

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