Synthetic biology software tools and databases

Synthetic biology applications

Bioinformatics tools

Databases

Synthetic biology aims to create functional devices, systems and organisms with novel and useful functions on the basis of catalogued and standardized biological building blocks. Although they were initially constructed to elucidate the dynamics of simple processes, designed…

Synthetic biology software tools and databases

Most Recent Tools

FIT
Desktop

FIT

Offers functions for parameter optimization and transcriptome prediction. FIT…

Offers functions for parameter optimization and transcriptome prediction. FIT achieves comparable or better prediction performance within a shorter computational time than the previous method. It…

MIRACH
Desktop

MIRACH

Validates the ever-growing biological pathway simulation models—both in…

Validates the ever-growing biological pathway simulation models—both in complexity and quantity. MIRACH is an on-the-fly probabilistic model checker for quantitative pathway models. It supports…

Systems…
Desktop

Systems Biology Simulation Core Library

Provides a large collection of numerical solvers and a sophisticated interface…

Provides a large collection of numerical solvers and a sophisticated interface hierarchy for the definition of custom differential equation systems. the Systems Biology Simulation Core Library, a…

ARDesigner
Web

ARDesigner Allosteric RNA Designer

Allows allosteric RNA design and incorporates mutational robustness in the…

Allows allosteric RNA design and incorporates mutational robustness in the design process. ARDesigner provides a simple means for researchers to design allosteric RNAs with specific properties. It…

Most Popular Tools

Addgene
Dataset

Addgene

A non-profit plasmid repository dedicated to helping scientists around the…

A non-profit plasmid repository dedicated to helping scientists around the world share high-quality plasmids. The repository archives plasmids generated by scientists, conducts quality control,…

Curators for Synthetic biology

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