Synthetic biology software tools and databases

Synthetic biology aims to create functional devices, systems and organisms with novel and useful functions on the basis of catalogued and standardized biological building blocks. Although they were initially constructed to elucidate the dynamics of simple processes, designed…

Synthetic biology steps

Bioinformatics tools

Databases

Most recent bioinformatics tools

synRNASeqNet
Desktop

synRNASeqNet

Implements various estimators of mutual information. synRNASeqNet executes…

Implements various estimators of mutual information. synRNASeqNet executes several estimator as Millow-Madow, Bayesian or the Chao-Shen. It offers wrappers to the k Nearest Neighbour (kNN) and kernel…

DePiCt
Web

DePiCt

Permits to design degenerate primers. DePiCt starts by computing a sequence…

Permits to design degenerate primers. DePiCt starts by computing a sequence alignment of the genes or the protein sequences and then identifies at least two conserved regions in the alignment such…

G T A T C G C T A
RNA workbench
Server

RNA workbench

Establishes a central, redistributable workbench for scientists and programmers…

Establishes a central, redistributable workbench for scientists and programmers working with RNA-related data. The RNA workbench builds a sustainable community around it. This platform is unique in…

Tandem Designer
Web

Tandem Designer

Yields a set of coding sequences (CDSs) whose nucleotide sequences are as…

Yields a set of coding sequences (CDSs) whose nucleotide sequences are as different as possible and whose codon usage frequencies are as highly adapted as possible to the host organism. Tandem…

Most popular analytical software and databases

Addgene
Dataset

Addgene

Archives plasmids generated by scientists, conducts quality control, annotates…

Archives plasmids generated by scientists, conducts quality control, annotates the associated data and makes the plasmids and their data available to the scientific community. Addgene is a non-profit…

Curators for Synthetic biology

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