Synthetic biology software tools and databases

Synthetic biology applications

Bioinformatics tools

Databases

Synthetic biology aims to create functional devices, systems and organisms with novel and useful functions on the basis of catalogued and standardized biological building blocks. Although they were initially constructed to elucidate the dynamics of simple processes, designed…

Synthetic biology software tools and databases

Most Recent Tools

VALORATE
Desktop

VALORATE

Estimates the null distribution and the p-value of the log-rank based on a…

Estimates the null distribution and the p-value of the log-rank based on a recent reformulation. VALORATE was developed and tested for cancer genomics that is heavily affected by unbalanced survival…

IraPPA
Web

IraPPA Integrative Ranking of Protein Protein Assemblies

Enhances the identification of near-native structures when applied to four…

Enhances the identification of near-native structures when applied to four docking methods. IraPPA is based on methods developed for Internet search ranking and electoral voting to solve the problem…

VARI
Desktop

VARI

Aims to detect and genotype simple and complex genetic variants in an…

Aims to detect and genotype simple and complex genetic variants in an individual or population. VARI is an implementation of a succinct colored de Bruijn graph that significantly reduces the amount…

DBNizer
Desktop

DBNizer

Constructs abstractions using information Dynamic Bayesian Network (DBN).…

Constructs abstractions using information Dynamic Bayesian Network (DBN). DBNizer reduces the number of variables from 92 to 10, and accelerates numerical simulation by an order of magnitude, yet…

Most Popular Tools

Addgene
Data

Addgene

A non-profit plasmid repository dedicated to helping scientists around the…

A non-profit plasmid repository dedicated to helping scientists around the world share high-quality plasmids. The repository archives plasmids generated by scientists, conducts quality control,…

Curators for Synthetic biology

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