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SynView | A GBrowse-compatible approach to visualizing comparative genome data

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Allows visual comparison of genome data. SynView is a light-weight, interactive and customizable comparative genomic visualization tool based on the GBrowse framework. The software can read mapping data and allow user to compare multiple genomes at several scales. It was developed for use in the CryptoDB project and has since been adopted by the PlasmoDB project to compare several genomes that are more divergent than Cryptosporidium. SynView can be integrated with other projects.

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SynView forum

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SynView classification

SynView specifications

Unique identifier:
OMICS_00947
Interface:
Graphical user interface
Operating system:
Unix/Linux
Computer skills:
Medium
Maintained:
No
Software type:
Package/Module
Restrictions to use:
None
Programming languages:
Perl
Requirements:
GBrowse, BioPerl, Apache

SynView distribution

versioning

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No versioning.

SynView support

Maintainer

This tool is not maintained anymore.

Additional information

http://gmod.org/wiki/SynView

Credits

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Publications

Institution(s)

Center for Tropical and Emerging Global Diseases, University of Georgia, Athens, GA, USA; Department of Genetics, University of Georgia, Athens, GA, USA; Department of Computer Science, University of Georgia, Athens, GA, USA; Penn Genomics Institute, University of Pennsylvania, Philadelphia, PA, USA

Funding source(s)

Supported in whole or in part by Federal funds from the National Institute of Allergy and Infectious Diseases, National Institutes of Health, Department of Health and Human Services, under Contract No. HHSN266200400037C.

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