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Associated diseases

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SynView specifications

Information


Unique identifier OMICS_00947
Name SynView
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
Computer skills Medium
Requirements
GBrowse, BioPerl, Apache
Maintained No

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Maintainer


This tool is not maintained anymore.

Additional information


http://gmod.org/wiki/SynView

Publication for SynView

SynView in publications

 (3)
PMCID: 4927625
PMID: 27445785
DOI: 10.3389/fnsyn.2016.00016

[…] neurexin-neuroligin interactions could provide selective visualization of synapses. similar to the grasp approaches, this method, based on neuroligin-neurexin interactions using splitgfp, is called synview. it is composed of spgfp1-10-inserted neurexin-1β between residues n275-d276 or a200-g201 for the presynaptic component, and the split-gfp11-inserted neuroligin-1 in the c-terminal end […]

PMCID: 3562157
PMID: 23234273
DOI: 10.1186/1471-2164-13-698

[…] value of 1e-05. this was followed by the mcl clustering algorithm using default parameters and the main inflation value (−i) set to 1.5. the orthologous clusters were displayed in figure using synview []., to generate phylogenetic trees, 14 core proteins encoded by 13 genomes were first concatenated and then aligned using muscle []. regions with poor alignments were removed with gblocks […]

PMCID: 2698008
PMID: 19486522
DOI: 10.1186/1471-2164-10-255

[…] and thus the genes exist in pieces on separate contigs (i.e. no contiguous sequence for the complete gene). in these cases, the most likely coordinates for the full-length locus was inferred., using synview [] for gbrowse, synteny maps were constructed using the model t. cruzi chromosomes as reference to compare to t. brucei and l. major. these t. cruzi-based trytryp synteny maps were used […]


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SynView institution(s)
Center for Tropical and Emerging Global Diseases, University of Georgia, Athens, GA, USA; Department of Genetics, University of Georgia, Athens, GA, USA; Department of Computer Science, University of Georgia, Athens, GA, USA; Penn Genomics Institute, University of Pennsylvania, Philadelphia, PA, USA
SynView funding source(s)
Supported in whole or in part by Federal funds from the National Institute of Allergy and Infectious Diseases, National Institutes of Health, Department of Health and Human Services, under Contract No. HHSN266200400037C.

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