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SyQADA specifications

Information


Unique identifier OMICS_25797
Name SyQADA
Alternative name System for Quality Assured Data Analysis
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data A protocol file.
Output data Some log files.
Operating system Unix/Linux, Mac OS
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Registration required Yes
Maintained Yes

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Maintainer


  • person_outline Paul Scheet <>

SyQADA in publication

PMCID: 5753459
PMID: 29301485
DOI: 10.1186/s12859-017-1991-3

[…] purposes of our final tabulation, we also excluded variants annotated as intronic or intergenic by annovar. an in-house analysis framework designed for quality control and reproducibility, called syqada (system for quality assured data analysis), was used to implement and execute all the bioinformatic pipelines described above., the default settings for vs and mu were tuned […]


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