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SyQADA specifications


Unique identifier OMICS_25797
Alternative name System for Quality Assured Data Analysis
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data A protocol file.
Output data Some log files.
Operating system Unix/Linux, Mac OS
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Registration required Yes
Maintained Yes


No version available


  • person_outline Paul Scheet

SyQADA citation


Strategies for identification of somatic variants using the Ion Torrent deep targeted sequencing platform

BMC Bioinformatics
PMCID: 5753459
PMID: 29301485
DOI: 10.1186/s12859-017-1991-3

[…] the purposes of our final tabulation, we also excluded variants annotated as intronic or intergenic by ANNOVAR. An in-house analysis framework designed for quality control and reproducibility, called SyQADA (System for Quality Assured Data Analysis), was used to implement and execute all the bioinformatic pipelines described above. […]

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