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SysCall | Identification and correction of systematic error in high-throughput sequence data

A logistic regression based classifier distinguishing heterozygous sites from systematic errors. Given a list of candidate heterozygous genomic locations and a SAM file of sequenced reads SysCall classifies each genomic location as either a heterozygous site or a systematic error and outputs according lists, along with the assigned posterior probabilities.

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SysCall forum

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SysCall classification

SysCall specifications

Unique identifier:
OMICS_01080
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Programming languages:
R
Stability:
Stable

SysCall distribution

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No versioning.

SysCall support

Maintainer

  • Lior Pachter <>

Credits

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Publications

Institution(s)

Department of Mathematics, University of California, Berkeley, Berkeley, CA, USA; Children's Hospital Oakland Research Institute, Oakland, CA, USA; Computer Science Division, University of California, Berkeley, Berkeley, CA; USA; Department of Molecular & Cell Biology, University of California, Berkeley, Berkeley, CA

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