SYSNPs statistics

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Citations per year

Number of citations per year for the bioinformatics software tool SYSNPs
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Tool usage distribution map

This map represents all the scientific publications referring to SYSNPs per scientific context
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Protocols

SYSNPs specifications

Information


Unique identifier OMICS_23295
Name SYSNPs
Alternative name Select Your SNPs
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No

Maintainers


This tool is not available anymore.

Additional information


https://bioportal.bioontology.org/projects/SYSNPs

Publication for Select Your SNPs

SYSNPs citations

 (12)
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NF kB2 Genetic Variations are Significantly Associated with Non Small Cell Lung Cancer Risk and Overall Survival

2018
Sci Rep
PMCID: 5869671
PMID: 29588475
DOI: 10.1038/s41598-018-23324-3
call_split See protocol

[…] be correlated with overall survival (OS) of patients with multiple myeloma. In addition, tagging SNPs rs7897947 and rs11574852 were selected through the use of the internet-based tools “Tagger” and “SySNPs for the CEU population,. The cut-off for minor allele frequency was determined at 5% and the coefficient of determination r2 = 0.8 was captured. Genomic location, minor allele frequencies (MAF) […]

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Are IL18RAP gene polymorphisms associated with body mass regulation? A cross sectional study

2017
BMJ Open
PMCID: 5695454
PMID: 29146643
DOI: 10.1136/bmjopen-2017-017875
call_split See protocol

[…] ntified and diluted to a final concentration of 100 ng ⁄µL. The IL18RAP single nuclear polymorphisms (SNPs) were selected for genotyping based on the conjunction of several parameters selected in the SYSNPs web tool: heterozygosity in a Caucasian population (>10% for the minor allele frequency), position and spacing along the gene and a possible functional effect (http://www.ensembl.org/index.html […]

library_books

A gene environment interaction analysis of plasma selenium with prevalent and incident diabetes: The Hortega study

2017
Redox Biol
PMCID: 5403796
PMID: 28437656
DOI: 10.1016/j.redox.2017.04.022

[…] (Chemagen), and quantified it with PicoGreen dsDNA Quantification Reagent (Invitrogen, Carlsbad, CA, USA). DNA was diluted to a final concentration of 100 ng/µl. We used bibliography searches and the SYSNPS program , based on public data sources including Ensembl and HapMap (GRCh36), to identify 597 single nucleotide polymorphisms (SNPs) from 155 candidate genes implicated in diabetes metabolic pa […]

library_books

Pharmacogenomic study in patients with multiple sclerosis

2015
PMCID: 4582905
PMID: 26445728
DOI: 10.1212/NXI.0000000000000154

[…] for GABA and glutamate receptors were selected through bibliographical searches, and a total of 384 biologically informative single nucleotide polymorphisms (SNPs) were selected for genotyping using Select Your SNPs, an online tool for selecting tagSNPs from a roster of candidate genes. […]

library_books

The nutrigenetic influence of the interaction between dietary vitamin E and TXN and COMT gene polymorphisms on waist circumference: a case control study

2015
J Transl Med
PMCID: 4557824
PMID: 26329592
DOI: 10.1186/s12967-015-0652-4

[…] related SNPs from six genes were selected based on their minor allele frequency (MAF) in Caucasians (0.1 or more), location, distribution, tag-SNP characteristics using the SySNP program (http://www.sysnps.org/‎), and their possible effects on function as determined in previous studies by our group []. The selected genes and reference names, chromosome position, locus, and the MAF of the selected […]

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Polymorphisms in Endothelin System Genes, Arsenic Levels and Obesity Risk

2015
PLoS One
PMCID: 4370725
PMID: 25799405
DOI: 10.1371/journal.pone.0118471
call_split See protocol

[…] m (Chemagen, Baesweiler, Germany). DNA was quantified and diluted to a final concentration of 100 ng ⁄μL.EDN system SNPs for genotyping were selected based on the conjunction of several parameters by SYSNPs []: heterozygosity (>10% for the minor allele frequency) in a Caucasian population, position and spacing along the gene, and possible functional effect (http://www.ensembl.org/index.html). Eigh […]


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SYSNPs institution(s)
Institut de Biologia Evolutiva (UPF-CSIC), Barcelona Biomedical Research Park (PRBB), Spain; CIBER en Epidemiología y Salud Pública (CIBERESP), Spain; Centro de Investigación Príncipe Felipe (CIPF), Valencia, Spain; Spanish National Institute for Bioinformatics (INB), Spain; Bioinformatics Unit (UBio), Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre (CNIO), Madrid, Spain; Centre for Research in Environmental Epidemiology (CREAL), Barcelona, Spain; Institut Municipal d’Investigació Mèdica (IMIM), Barcelona, Spain; CIBER en Enfermedades Raras (CIBERER), Spain
SYSNPs funding source(s)
Partially supported by Red Temática de Investigación Cooperativa en Cáncer, Fundació La Marató de TV3, CIBER en Epidemiología y Salud Pública (Ciberesp), CIBER en Enfermedades Raras (Ciberer) and the National Institute for Bioinformatics, a Platform of Genoma España.

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