Offers a complete annotation pipeline for integrating, analyzing, annotating and presenting genomic and expression data from sequencing platforms. STINGRAY offers to user a phylogenetic module that all three steps typically necessary for molecular phylogenetic analysis, (i) retrieval/inference of homologous sequences, (ii) creation of multiple sequence alignments and, (iii) phylogenetic tree construction can be performed in STINGRAY.

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STINGRAY classification

STINGRAY specifications

Software type:
Package
Restrictions to use:
License purchase required
Input format:
FASTA
License:
GNU General Public License version 2.0
Version:
2.0
Interface:
Web user interface
Input data:
Nucleotide or protein sequences
Programming languages:
Perl
Computer skills:
Basic
Stability:
Beta

User report

0 user reviews

0 user reviews

No review has been posted.

STINGRAY forum

No open topic.

STINGRAY classification

STINGRAY specifications

Software type:
Pipeline
Restrictions to use:
License purchase required
Input format:
FASTA
Programming languages:
Perl
Computer skills:
Advanced
Requirements:
Perl, Apache, MySQL
Source code URL:
https://sourceforge.net/p/stingray-biowebdb/code-0/?source=navbar
Interface:
Command line interface
Input data:
Nucleotide or protein sequences
Operating system:
Unix/Linux
License:
GNU General Public License version 2.0
Stability:
Stable

Publications

  • (Wagner et al., 2014) STINGRAY: system for integrated genomic resources and analysis. BMC Res Notes.
    PMID: 24606808

Credits

Institution(s)

Laboratório de Biologia Computacional e Sistemas, Instituto Oswaldo Cruz (IOC), Fundação Oswaldo Cruz (FIOCRUZ), Rio de Janeiro, Rio de Janeiro, Brazil; Laboratório de Protozoologia, Departamento de Microbiologia, Imunologia e Parasitologia (MIP), Centro de Ciências Biológicas (CCB), Universidade Federal de Santa Catarina (UFSC), Santa Catarina, Brazil; Laboratório de Doenças Infecciosas e Parasitárias (LDIP), Área de Ciências Biológicas e da Saúde (ACBS), Universidade do Oeste de Santa Catarina (Unoesc), Santa Catarina, Brazil; Pólo de Biologia Computacional e Sistemas, Instituto Oswaldo Cruz (IOC), Fundação Oswaldo Cruz (FIOCRUZ), Rio de Janeiro, Brazil; Laboratório de Biologia Molecular de Parasitas e Vetores, Instituto Oswaldo Cruz (IOC), Fundação Oswaldo Cruz (FIOCRUZ), Rio de Janeiro, Brazil; Laboratório de Genética Molecular de Microrganismos, Instituto Oswaldo Cruz (IOC), Fundação Oswaldo Cruz (FIOCRUZ), Rio de Janeiro, Brazil; Laboratório de Bioinformática, Instituto Carlos Chagas (ICC), Fundação Oswaldo Cruz (FIOCRUZ), Paraná, Brazil; Instituto Militar de Engenharia (IME), Seção de Engenharia de Computação (SE-8), Rio de Janeiro, Brazil; Instituto de Matemática, Departamento de Ciência da Computação, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil; Instituto Alberto Luiz Coimbra de Pós-graduação e Pesquisa de Engenharia (COPPE), Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil

Funding source(s)

This project was funded by the CNPq, the FAPERJ and the CAPE.

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