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Offers a complete annotation pipeline for integrating, analyzing, annotating and presenting genomic and expression data from sequencing platforms. STINGRAY offers to user a phylogenetic module that all three steps typically necessary for molecular phylogenetic analysis, (i) retrieval/inference of homologous sequences, (ii) creation of multiple sequence alignments and, (iii) phylogenetic tree construction can be performed in STINGRAY.

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STINGRAY classification

STINGRAY specifications

Software type:
Package
Restrictions to use:
License purchase required
Input format:
FASTA
License:
GNU General Public License version 2.0
Version:
2.0
Interface:
Web user interface
Input data:
Nucleotide or protein sequences
Programming languages:
Perl
Computer skills:
Basic
Stability:
Beta

User report

0 user reviews

0 user reviews

No review has been posted.

STINGRAY forum

No open topic.

STINGRAY versioning

No versioning.

STINGRAY classification

STINGRAY specifications

Software type:
Pipeline
Restrictions to use:
License purchase required
Input format:
FASTA
Programming languages:
Perl
Computer skills:
Advanced
Requirements:
Perl, Apache, MySQL
Source code URL:
https://sourceforge.net/p/stingray-biowebdb/code-0/?source=navbar
Interface:
Command line interface
Input data:
Nucleotide or protein sequences
Operating system:
Unix/Linux
License:
GNU General Public License version 2.0
Stability:
Stable

Credits

Publications

  • (Wagner et al., 2014) STINGRAY: system for integrated genomic resources and analysis. BMC Res Notes.
    PMID: 24606808

Institution(s)

Laboratório de Biologia Computacional e Sistemas, Instituto Oswaldo Cruz (IOC), Fundação Oswaldo Cruz (FIOCRUZ), Rio de Janeiro, Rio de Janeiro, Brazil; Laboratório de Protozoologia, Departamento de Microbiologia, Imunologia e Parasitologia (MIP), Centro de Ciências Biológicas (CCB), Universidade Federal de Santa Catarina (UFSC), Santa Catarina, Brazil; Laboratório de Doenças Infecciosas e Parasitárias (LDIP), Área de Ciências Biológicas e da Saúde (ACBS), Universidade do Oeste de Santa Catarina (Unoesc), Santa Catarina, Brazil; Pólo de Biologia Computacional e Sistemas, Instituto Oswaldo Cruz (IOC), Fundação Oswaldo Cruz (FIOCRUZ), Rio de Janeiro, Brazil; Laboratório de Biologia Molecular de Parasitas e Vetores, Instituto Oswaldo Cruz (IOC), Fundação Oswaldo Cruz (FIOCRUZ), Rio de Janeiro, Brazil; Laboratório de Genética Molecular de Microrganismos, Instituto Oswaldo Cruz (IOC), Fundação Oswaldo Cruz (FIOCRUZ), Rio de Janeiro, Brazil; Laboratório de Bioinformática, Instituto Carlos Chagas (ICC), Fundação Oswaldo Cruz (FIOCRUZ), Paraná, Brazil; Instituto Militar de Engenharia (IME), Seção de Engenharia de Computação (SE-8), Rio de Janeiro, Brazil; Instituto de Matemática, Departamento de Ciência da Computação, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil; Instituto Alberto Luiz Coimbra de Pós-graduação e Pesquisa de Engenharia (COPPE), Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil

Funding source(s)

This project was funded by the CNPq, the FAPERJ and the CAPE.

Link to literature

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