systemPipeR specifications


Unique identifier OMICS_09105
Name systemPipeR
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 1.6.4
Stability Stable
Requirements Rsamtools, Biostrings, ShortRead, methods
Maintained Yes


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  • person_outline Thomas Girke <>

Publication for systemPipeR

systemPipeR institution(s)
Institute for Integrative Genome Biology, University of California, Riverside, CA, USA
systemPipeR funding source(s)
This work was supported by grants from the National Science Foundation (ABI-0957099, MCB-1021969, IOS-1546879), the National Institutes of Health (U24AG051129, R01-AI36959) and the National Institute of Food and Agriculture (2011-68004-30154).

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