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  2. High-throughput sequencing
  3. Whole-genome sequencing
  4. Germline SNP detection
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SNP and indel calling for pooled and individual targeted resequencing studies.

Software type:
Package
Interface:
Command line interface
Restrictions to use:
None
Operating system:
Unix/Linux, Mac OS, Windows
Programming languages:
Python, R
Computer skills:
Advanced
Stability:
Stable
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  • (Rivas et al., 2011) Deep resequencing of GWAS loci identifies independent rare variants associated with inflammatory bowel disease. Nature genetics.
    PMID: 21983784

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