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T-BAS specifications

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Unique identifier OMICS_14381
Name T-BAS
Alternative name Tree-Based Alignment Selector
Interface Web user interface
Restrictions to use None
Input data Curated alignments of sequence data for the selected taxa or a FASTA formatted file with unknown query sequences.
Input format FASTA
Output data Separate or concatenated alignments.
Output format PHYLIP, FASTA, XML, CSV, NEXUS
Programming languages Javascript, PHP, Python
Computer skills Basic
Version 1.0
Stability Stable
Maintained No

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Publication for Tree-Based Alignment Selector

T-BAS citation

library_books

Repression of intestinal transporters and FXR FGF15 signaling explains bile acids dysregulation in experimental colitis associated colon cancer

2017
PMCID: 5609951
PMID: 28969019
DOI: 10.18632/oncotarget.18885

[…] (figure )., because ugts mediated bas glucuronidation in the ileum remained largely unchanged, we sought to determine the transporters involved in the uptake of bas. we found taurine-conjugated bas (t-bas), which are dominant in the ileum, were markedly decreased in ileum while generally accumulated in other compartments of aom/dss-treated mice (figure ). the uptake of t-bas in the ileum depends […]


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T-BAS institution(s)
Center for Integrated Fungal Research, Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC, USA; Department of Biology, Duke University, Durham, NC, USA; School of Plant Sciences, The University of Arizona, Tucson, AZ, USA; Department of Ecology and Evolutionary Biology, The University of Arizona, Tucson, AZ, USA; San Diego Supercomputer Center, University of California, San Diego, La Jolla, CA, USA; Department of Medicine, University of Giessen, Giessen, Germany; Department of Ecology, Evolution and Behavior, University of Minnesota, Saint Paul, MN, USA
T-BAS funding source(s)
Funding for the development of T-BAS was provided by the National Science Foundation (NSF) Dimensions of Biodiversity (DoB) (DEB-1046167, DEB-1045766 and DEB-1046065).

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