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T-BAS specifications


Unique identifier OMICS_14381
Name T-BAS
Alternative name Tree-Based Alignment Selector
Interface Web user interface
Restrictions to use None
Input data Curated alignments of sequence data for the selected taxa or a FASTA formatted file with unknown query sequences.
Input format FASTA
Output data Separate or concatenated alignments.
Programming languages Javascript, PHP, Python
Computer skills Basic
Version 1.0
Stability Stable
Maintained No


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Publication for Tree-Based Alignment Selector

T-BAS citation


Repression of intestinal transporters and FXR FGF15 signaling explains bile acids dysregulation in experimental colitis associated colon cancer

PMCID: 5609951
PMID: 28969019
DOI: 10.18632/oncotarget.18885

[…] (figure )., because ugts mediated bas glucuronidation in the ileum remained largely unchanged, we sought to determine the transporters involved in the uptake of bas. we found taurine-conjugated bas (t-bas), which are dominant in the ileum, were markedly decreased in ileum while generally accumulated in other compartments of aom/dss-treated mice (figure ). the uptake of t-bas in the ileum depends […]

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T-BAS institution(s)
Center for Integrated Fungal Research, Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC, USA; Department of Biology, Duke University, Durham, NC, USA; School of Plant Sciences, The University of Arizona, Tucson, AZ, USA; Department of Ecology and Evolutionary Biology, The University of Arizona, Tucson, AZ, USA; San Diego Supercomputer Center, University of California, San Diego, La Jolla, CA, USA; Department of Medicine, University of Giessen, Giessen, Germany; Department of Ecology, Evolution and Behavior, University of Minnesota, Saint Paul, MN, USA
T-BAS funding source(s)
Funding for the development of T-BAS was provided by the National Science Foundation (NSF) Dimensions of Biodiversity (DoB) (DEB-1046167, DEB-1045766 and DEB-1046065).

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