## T-BAS statistics

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### Citations per year

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### Tool usage distribution map

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### Associated diseases

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### Popular tool citations

*chevron_left*Tree visualization Missing data prediction

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## Protocols

## T-BAS specifications

### Information

Unique identifier | OMICS_14381 |
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Name | T-BAS |

Alternative name | Tree-Based Alignment Selector |

Interface | Web user interface |

Restrictions to use | None |

Input data | Curated alignments of sequence data for the selected taxa or a FASTA formatted file with unknown query sequences. |

Input format | FASTA |

Output data | Separate or concatenated alignments. |

Output format | PHYLIP, FASTA, XML, CSV, NEXUS |

Programming languages | Javascript, PHP, Python |

Computer skills | Basic |

Version | 1.0 |

Stability | Stable |

Maintained | No |

### Maintainer

**This tool is not available anymore.

### Additional information

## Publication for Tree-Based Alignment Selector

## T-BAS citations

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### Global population structure and adaptive evolution of aflatoxin‐producing fungi

[…] on A. flavus and A. parasiticus isolates and their associated chemotype profiles. Phylogenies were displayed in circle tree format using FigTree v1.3.1 (http://tree.bio.ed.ac.uk/software/figtree/) or **T‐BAS** v2.0 (Carbone, unpublished), an extension of the T‐BAS v1.0 toolkit (Carbone et al., ). Clade groupings were labeled along the tree perimeter based on species or morphotype (e.g., A. flavus L, A […]

*library_books*

### Dynamics of hybrid switching DS I A epidemic model

[…] sexual partner, α > 0 is the is the susceptibility of susceptible individuals and βα > 0 becomes the average number of effective contacts of one infective individual per unit time:1.1{dS(t)dt=μ(S0−S(**t))−βαS**(t)I(t)N(t),dI(t)dt=βαS(t)I(t)N(t)−(μ+γ)I(t),dA(t)dt=γI(t)−δA(t),where the parameters μ, S
0, α, γ and δ∈ℝ+. () assume a homogeneous susceptible population such that there is one group of susce […]

*library_books*

### Repression of intestinal transporters and FXR FGF15 signaling explains bile acids dysregulation in experimental colitis associated colon cancer

[…] Because UGTs mediated BAs glucuronidation in the ileum remained largely unchanged, we sought to determine the transporters involved in the uptake of BAs. We found taurine-conjugated BAs (**T-BAs**), which are dominant in the ileum, were markedly decreased in ileum while generally accumulated in other compartments of AOM/DSS-treated mice (Figure ). The uptake of T-BAs in the ileum depends […]

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### Wood staining fungi revealed taxonomic novelties in Pezizomycotina: New order Superstratomycetales and new species Cyanodermella oleoligni

[…] the “dark” group were added to the six-locus supermatrix (5.8S, nrLSU, nrSSU, mitSSU, RPB1, RPB2) used to generate the most comprehensive phylogeny for Pezizomycotina (986 taxa) as part of the online **T-BAS** tool (http://tbas.hpc.ncsu.edu; Carbone et al. unpubl. data). We also completed analyses on the same data set but our fungal strains were represented by the ribosomal (Analysis 2A; 5.8S, nrLSU, […]

*library_books*

### A new method for the extraction of fetal ECG from the dependent abdominal signals using blind source separation and adaptive noise cancellation techniques

[…] it is not enough to estimate the mixing matrix, through (). The estimated source signals obtained by a direct BSS, for the noisy case, can be written as follows
(4)y¯(t):=nx¯(t):=y(t)+n¯(t),where y(**t):=BAs**(t) and n¯(t)=Bn(t). That is the noisy estimated source y¯(t) is the sum of y(t) the ideal estimated source, and the noise n¯(t). Ideally, we would like to retrieve y(t) by denoising y¯(t), but […]

*library_books*

### Approximate Joint Diagonalization and Geometric Mean of Symmetric Positive Definite Matrices

[…] for s(t), without assuming any knowledge on the mixing matrix A (that is why it is named “blind”). The goal of BSS is to estimate the demixing matrix B yielding source estimates y(t) such as
y(t)=Bx(**t)=BAs**(t),
where we have ignored the noise term in () and where A is the unknown true mixing matrix. An important family of BSS problems are solved by estimating a number of matrices holding second-or […]

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