Protocols

T-BioInfo specifications

Information


Unique identifier OMICS_26724
Name T-BioInfo
Interface Web user interface
Restrictions to use Academic or non-commercial use
Input data Some raw transcriptomic, genomic, epigenetic, mass-spec or structural data.
Input format FastQ,FASTA,CSV
Output data Processed or analysed data.
Output format CSV,TXT,VCF
Biological technology Illumina, Life Technologies, Pacific Biosciences, Roche, Affymetrix
Programming languages C++, R, Ruby
Computer skills Basic
Stability Beta
Registration required Yes
Maintained Yes

Taxon


  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus
    • Rattus norvegicus
  • Viruses
    • Ebola virus
    • Hepatitis B virus
    • Hepatitis C virus genotype 2
    • Hepatitis C virus genotype 3
    • Hepatitis C virus genotype 4
    • Human immunodeficiency virus 1
    • Human immunodeficiency virus 2
    • Human papillomavirus
    • Influenza A virus
    • Influenza A virus (A/Puerto Rico/8/1934(H1N1))
    • Influenza B virus

Documentation


Maintainer


T-BioInfo citation

call_split

Differential Expression of Genes that Control Respiration Contribute to Thermal Adaptation in Redband Trout (Oncorhynchus mykiss gairdneri)

2015
Genome Biol Evol
PMCID: 4494065
PMID: 25943341
DOI: 10.1093/gbe/evv078
call_split See protocol

[…] r for Biotechnology Information (NCBI) website. The putative RNA-editing and single nucleotide polymorphism (SNP) variants were identified with a pipeline of the RNA-editing/Mutation algorithm in the T-bioinfo platform (http://tauber-bioinfo.haifa.ac.il, last accessed May 18, 2015). Briefly, the 72 next-generation sequencing samples were mapped onto the mRNA sequences of 80 genes of interest. For […]

T-BioInfo institution(s)
University of Haifa, Israel Pine Biotech, Haifa, Israel

T-BioInfo review

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Anonymous user #60080

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Web
This tool is quite useful for people who don't have any prior knowledge to coding and won't have sufficient time to design the pipelines from the scratch. Quite informative and ready to use pipelines. The basics of these pipelines are explained in a nice and lucid way at edu.t-bio.info