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T-CUP specifications


Unique identifier OMICS_12140
Name T-CUP
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 2.0
Stability Stable
Maintained Yes




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  • person_outline Dominik Heider <>

Publication for T-CUP

T-CUP citations


Altered Functional Connectivity of Fronto Cingulo Striatal Circuits during Error Monitoring in Adolescents with a History of Childhood Abuse

PMCID: 5797423
PMID: 29434543
DOI: 10.3389/fnhum.2018.00007

[…] (wasi; wechsler, ) to assess iq. socioeconomic status (ses) was measured by two items from the family affluence scale (fas; currie et al., ) on housing tenure and room occupancy. a 10 panel t-cup urine test was used to test for substance abuse and participants who tested positive for any of the 10 substances were excluded from taking part. other exclusion criteria were left-handedness, […]


Reduced functional connectivity of fronto parietal sustained attention networks in severe childhood abuse

PMCID: 5708742
PMID: 29190830
DOI: 10.1371/journal.pone.0188744

[…] and sexual abuse and emotional and physical neglect. socioeconomic status (ses) was measured by two items from the family affluence scale (fas) [] on housing tenure and room occupancy., a 10 panel t-cup urine test (http://www.testfield.co.uk) was used to test for substance abuse. participants who tested positive for any of the 10 substances were excluded resulting in the exclusion of 4 […]


Is transcription in sperm stationary or dynamic?

PMCID: 5649092
PMID: 28845020
DOI: 10.1262/jrd.2016-093

[…] and spermiogenesis using in situ hybridization showed that the transcript number for hale-bopp (hale), schumacher-levy (schuy), davis-cup (d-cup), presidents-cup (p-cup), tetleys-cup (t-cup), flyer-cup (f-cup), sungrazer (sunz), and other genes in elongated spermatids was significantly higher than that of in round spermatids. in addition, the transcript number for these genes […]


Partial HIV C2V3 envelope sequence analysis reveals association of coreceptor tropism, envelope glycosylation and viral genotypic variability among Kenyan patients on HAART

PMCID: 5310022
PMID: 28196510
DOI: 10.1186/s12985-017-0703-y

[…] inexpensive genotyping sequence analysis that however, suffer from reduced sensitivity []. to improve robustness of genotypic tropism assignments, a number of tools have been developed including t-cup 2.0, webpssmx4r5, webpssmsinsi and geno2pheno, as well as rule-based methods like esbjörnsson rule and raymond’s rule with the objective of expanding the scope of sensitivity to include […]


Neurofunctional Abnormalities during Sustained Attention in Severe Childhood Abuse

PMCID: 5104469
PMID: 27832090
DOI: 10.1371/journal.pone.0165547

[…] learning disability, neurological abnormalities, epilepsy, iq < 70 and mri contraindications. urine screening for recent drug use was conducted with 10-panel urine drug test integrated cups (t-cup; http://www.testfield.co.uk). all participants or their guardians if the participant was under the age of 18, provided written informed consent to participate in the study. young people […]


A Comparison of Morphine Delivery in Neonatal Opioid Withdrawal

PMCID: 5038613
PMID: 27695339
DOI: 10.4137/SART.S34550

[…] was to compare nas outcomes consisting of morphine doses and length of stay (los) for the two models of morphine delivery., our hospital developed the toronto centre for substance use in pregnancy (t-cup) in 1997. with the growing number of women attending t-cup with a diagnosis of opioid use disorder, so did the census of newborns with nas. there were frequent occasions during which infants […]

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T-CUP institution(s)
Research Group Bioinformatics, Center of Medical Biotechnology, University of Duisburg-Essen, Essen, Germany
T-CUP funding source(s)
This work was supported by Deutsche Forschungsgemeinschaft, project TRR60/A6.

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