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Number of citations per year for the bioinformatics software tool T-RECs
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T-RECs specifications

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Unique identifier OMICS_14710
Name T-RECs
Alternative name Tool for RECombinations
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Input data The query sequence(s), the annotated sequences, an annotation file of viral clusters/groups in tab-delimited format, a functional annotation file that designates potential regions of interest in the analyzed genomes.
Input format FASTA
Output data The potential recombination events visualized in a graphical window, a similarity plot, the identified genotypes, the recombination events.
Operating system Windows
Programming languages Visual Basic
Computer skills Medium
Version 0.1
Stability Beta
Requirements
USEARCH/UCLUST
Maintained Yes

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Maintainer


  • person_outline Constantinos Stathopoulos

Publication for Tool for RECombinations

T-RECs citation

library_books

Heterogeneity of the Epstein Barr Virus (EBV) Major Internal Repeat Reveals Evolutionary Mechanisms of EBV and a Functional Defect in the Prototype EBV Strain B95 8

2017
J Virol
PMCID: 5686732
PMID: 28904201
DOI: 10.1128/JVI.00920-17

[…] analysis was conducted using Geneious, with a Jukes-Cantor genetic distance model and the neighbor-joining method. Identity plots comparing a virus with a panel of other viruses were generated using T-RECs (). This approach is scalable to an unlimited number of comparator strains, but random mutations can cause a deviation from 100% similarity that may complicate interpretation. Bootscan analysis […]


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T-RECs institution(s)
Department of Biochemistry and Biotechnology, Bioinformatics Laboratory, University of Thessaly, Larisa, Greece; Department of Biochemistry and Biotechnology, Molecular Virology Laboratory, University of Thessaly, Larisa, Greece; Faculty of Life Sciences, University of Manchester, Manchester, UK
T-RECs funding source(s)
This work has been supported under the "ARISTEIA II" Action of the "OPERATIONAL PROGRAMME EDUCATION AND LIFELONG LEARNING" and is co-funded by the European Social Fund (ESF) and National Resources and also supported by the research grants from the Postgraduate Programme ‘Applications of Molecular Biology-Genetics, Diagnostic Biomarkers’ of the University of Thessaly, School of Health Sciences, Department of Biochemistry & Biotechnology.

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