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T346Hunter specifications

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Unique identifier OMICS_10710
Name T346Hunter
Alternative name Type Three, Four and Six secretion system Hunter
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No

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Publication for Type Three, Four and Six secretion system Hunter

T346Hunter citations

 (11)
library_books

Indigenous Pseudomonas spp. Strains from the Olive (Olea europaea L.) Rhizosphere as Effective Biocontrol Agents against Verticillium dahliae: From the Host Roots to the Bacterial Genomes

2018
Front Microbiol
PMCID: 5829093
PMID: 29527195
DOI: 10.3389/fmicb.2018.00277

[…] ns (i.e., pathogenic, endophytic, or mutualistic symbioses) (Costa et al., ; Green and Mecsas, ). The presence of TSSs in the genomes of strains PIC25, PIC105, and PICF141 was confirmed by using the “T346Hunter” web-based tool (Martínez-García et al., ). “T346hunter” allowed the identification of flagellar and non-flagellar type III (T3SS), type IV (T4SS), and type VI (T6SS) secretion systems, alt […]

library_books

Genome analysis of two novel Pseudomonas strains exhibiting differential hypersensitivity reactions on tobacco seedlings reveals differences in nonflagellar T3SS organization and predicted effector proteins

2018
PMCID: 5911992
PMID: 29464939
DOI: 10.1002/mbo3.553

[…] The identification and localization of T3SS clusters in the genomes of S1E40 and S3E12 were performed using T346Hunter (Martinez‐Garcia et al., ). One nonflagellar and two flagellar‐based T3SS clusters were identified in both genomes. The nonflagellar (NF‐T3SS) cluster (Figure ) showed differences in the ge […]

call_split

Complete Genome Sequences of Three Xanthomonas citri Strains from Texas

2017
Genome Announc
PMCID: 5511912
PMID: 28705973
DOI: 10.1128/genomeA.00609-17
call_split See protocol

[…] on, and X. axonopodis pv. manihotis strain UG21, isolated from cassava in Uganda (), with 85% and 82% query coverage, respectively. Of note, the plasmids contained a region of ca. 39 kb identified by T346Hunter () as similar to type 4 conjugational transfer genes, indicating the potential for horizontal transfer. No genes encoding potential effectors were identified on any of these plasmids. Three […]

library_books

Type VI Secretion Effectors: Methodologies and Biology

2017
PMCID: 5471719
PMID: 28664151
DOI: 10.3389/fcimb.2017.00254

[…] e online bioinformatics tools or databases provide a suggestion for potential effectors, such as an effector protein predictor, secretEPDB (An et al., , ); a T6SS database; SecReT6 (Li et al., ); and T346hunter, which can annotate homologs of type III, IV and VI secretion systems automatically (Martínez-García et al., ). For researchers working on Burkholderia spp., DBSecSys is an online database […]

library_books

Pan Genomic Analysis Permits Differentiation of Virulent and Non virulent Strains of Xanthomonas arboricola That Cohabit Prunus spp. and Elucidate Bacterial Virulence Factors

2017
Front Microbiol
PMCID: 5389983
PMID: 28450852
DOI: 10.3389/fmicb.2017.00573

[…] lated to bacterial conjugation, have been obtained after searching for homologs using the Blast tool from the NCBI, and also corroborated using the web-based tool for prediction of T4SS-related genes T346Hunter (Martínez-García et al., ); but the identity of the putative orthologous genes found in X. arboricola showed an amino acid sequence identity lower than 80% for all the genes. Despite of thi […]

library_books

Comprehensive analysis of draft genomes of two closely related pseudomonas syringae phylogroup 2b strains infecting mono and dicotyledon host plants

2016
BMC Genomics
PMCID: 5249006
PMID: 28105943
DOI: 10.1186/s12864-016-3358-y

[…] gned region and the 3′ stop codon, it is an active effector. Otherwise, the effector is truncated []. The search for the clusters of the type III, IV, and VI secretion systems was conducted using the T346Hunter server [].To find the genes responsible for the phytotoxin synthesis, we used the blastn algorithm [] with the E-value cutoff of 1 × 10−10 and the identity of 80%. To find the genes respons […]

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T346Hunter institution(s)
Área de Genética, Facultad de Ciencias, Instituto de Hortofruticultura Subtropical y Mediterránea 'La Mayora', Universidad de Málaga, Consejo Superior de Investigaciones Científicas (IHSM-UMA-CSIC), Málaga, Spain; Centro de Biotecnología y Genómica de Plantas (CBGP), Universidad Politécnica de Madrid-Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria, Parque Científico y Tecnológico de la Universidad Politécnica de Madrid, Campus de Montegancedo, Pozuelo de Alarcón, Madrid, Spain; Departamento de Biotecnología, Escuela Técnica Superior de Ingenieros Agrónomos, Universidad Politécnica de Madrid, Madrid, Spain

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