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T3SEpre specifications


Unique identifier OMICS_09097
Name T3SEpre
Interface Web user interface
Restrictions to use None
Input format FASTA
Computer skills Basic
Stability Stable
Maintained Yes

T3SEpre citations


Computational approach to predict species specific type III secretion system (T3SS) effectors using single and multiple genomes

PMCID: 5168842
PMID: 27993130
DOI: 10.1186/s12864-016-3363-1

[…] composition and secondary structure properties in the n-terminus of effectors and was used to predict effectors from several animal and plant pathogens []. subsequent in silico approaches such as t3sepre, sieve, and bpbaac have used machine learning to train algorithms on features such as g + c content, protein solvent accessibility, and position preference of the n-terminus amino acids [–]. […]


Effective Identification of Bacterial Type III Secretion Signals Using Joint Element Features

PMCID: 3617162
PMID: 23593149
DOI: 10.1371/journal.pone.0059754

[…] accessibility to the specific t3s recognition. we developed a joint-feature distribution model to integrate position-specific aac, sse and acc features of the t3s signal sequences. the model, namely t3sepre, achieves a high sensitivity of 95.9% at a specificity of 97.7% (5-fold cross validation). the model is robust, inter-species effective, and outperforms the other current software […]

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