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T3SEpre specifications

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Unique identifier OMICS_09097
Name T3SEpre
Interface Web user interface
Restrictions to use None
Input format FASTA
Computer skills Basic
Stability Stable
Maintained Yes

T3SEpre citations

 (2)
library_books

Computational approach to predict species specific type III secretion system (T3SS) effectors using single and multiple genomes

2016
PMCID: 5168842
PMID: 27993130
DOI: 10.1186/s12864-016-3363-1

[…] composition and secondary structure properties in the n-terminus of effectors and was used to predict effectors from several animal and plant pathogens []. subsequent in silico approaches such as t3sepre, sieve, and bpbaac have used machine learning to train algorithms on features such as g + c content, protein solvent accessibility, and position preference of the n-terminus amino acids [–]. […]

library_books

Effective Identification of Bacterial Type III Secretion Signals Using Joint Element Features

2013
PMCID: 3617162
PMID: 23593149
DOI: 10.1371/journal.pone.0059754

[…] accessibility to the specific t3s recognition. we developed a joint-feature distribution model to integrate position-specific aac, sse and acc features of the t3s signal sequences. the model, namely t3sepre, achieves a high sensitivity of 95.9% at a specificity of 97.7% (5-fold cross validation). the model is robust, inter-species effective, and outperforms the other current software […]


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