T4SEpre specifications

Information


Unique identifier OMICS_15128
Name T4SEpre
Interface Web user interface
Restrictions to use None
Input data A single protein sequence or multiple protein sequences.
Input format FASTA
Output data Computational models with a Leave-One genus-Out strategy.
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Bacteria
    • Helicobacter pylori

Maintainer


  • person_outline Yejun Wang <>

Publication for T4SEpre

T4SEpre in publications

 (2)
PMCID: 5549432
PMID: 28789673
DOI: 10.1186/s13104-017-2671-0

[…] effectiveccbd for detection of conserved binding domains of type iii chaperones, effectiveeld for secretion system independent prediction of secreted proteins based on eukaryotic-like domains, t4sepre for recognition of type iv secreted proteins and predotar to screen n-terminal targeting sequences to predict their subcellular localization in eukaryotic host cells., cultures of rumen […]

PMCID: 4686621
PMID: 26734033
DOI: 10.3389/fpls.2015.01126

[…] (observed with % of length and % identity) with any previously described t3e were searched. we also searched the presence or absence of t3e genes screened by hajri et al. (). the two models “t4sepre_bpbaac” and “t4sepre_psaac” of the t4sepre package (wang et al., ) were used to predict type four effectors (t4e) from the four x. arboricola genomes. type six secretion system (t6ss) genes […]


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T4SEpre institution(s)
Genomics Research Center, Harbin Medical University, Harbin, China; Department of Microbiology and Infectious Diseases, University of Calgary, Calgary, AB, Canada
T4SEpre funding source(s)
The work is supported by a National Natural Science Foundation of China (NSFC81301390), a National Natural Science Foundation of China (NSFC30970119) and a National Natural Science Foundation of China and National Institutes of Health of USA (NSFC-NIH81161120416).

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