TADbit specifications

Unique identifier:
OMICS_11390
Interface:
Command line interface
Input data:
TADbit takes as input the sequencing reads of 3C-based experiments.
Programming languages:
Python
Computer skills:
Advanced
Stability:
Stable
Software type:
Pipeline/Workflow
Restrictions to use:
None
Operating system:
Unix/Linux
License:
GNU General Public License version 3.0
Version:
0.2.51
Maintained:
Yes

versioning

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TADbit distribution

download

TADbit support

Documentation

Maintainers

  • Guillaume Filion <>
  • Marc Marti-Renom <>

Additional information

http://3dgenomes.github.io/TADbit/

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Credits

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Publications

Institution(s)

CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology
(BIST), Barcelona, Spain; Gene Regulation, Stem Cells and Cancer Program, Centre for Genomic
Regulation (CRG), Barcelona, Spain; Universitat Pompeu Fabra (UPF), Barcelona, Spain; ICREA,
Barcelona, Spain

Funding source(s)

Supported by the European Research Council under the European Union’s Seventh Framework Programme (FP7/2007-2013) / ERC grant agreement 609989, the Spanish Ministry of Economy and Competitiveness (BFU2013-47736- P) and the Human Frontiers Science Program (RGP0044) and the
Spanish Ministry of Economy and Competitiveness, ‘Centro de Excelencia Severo Ochoa 2013-2017’, SEV-2012-0208 to the CRG.

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