TADkit specifications

Information


Unique identifier OMICS_22272
Name TADkit
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Additional information


https://github.com/3DGenomes/TADkit http://sgt.cnag.cat/3dg/tadkit/demo.h/index.html#/project/loader

Information


Unique identifier OMICS_22272
Name TADkit
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Javascript
Computer skills Advanced
Version 0.1.0
Stability Stable
Maintained Yes

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Additional information


https://github.com/3DGenomes/TADkit http://sgt.cnag.cat/3dg/tadkit/demo.h/index.html#/project/loader

TADkit in publications

 (3)
PMCID: 5638070
PMID: 28771695
DOI: 10.1002/1873-3468.12778

[…] then be visualized using the juicebox browser . finally, the tadbit software can output complete experimental dataset in standard json format, which can then be imported and visualized using the tadkit 3d browser. importantly, data accessibility and portability in 3d genomics still require some time to develop a widely accepted format for storing and disseminating interaction data […]

PMCID: 5290626
PMID: 28159004
DOI: 10.1186/s13059-017-1161-y

[…] in conjunction with other genomic features, is potentially very powerful. several visualization tools for 3d genome structures are available, which include gmol [], shrec3d [], tadbit [] and tadkit []., additional file 1 , we thank br. lajoie, h. ozadam, y. wang and f. yue for responding to our queries about their work., this work was funded by national institutes of health awards u54 […]

PMCID: 4556012
PMID: 26328929
DOI: 10.1186/s13059-015-0745-7

[…] domain calls, peak calls from hiccups, and ctcf binding sites []. several tools are currently under development for visualization of three-dimensional models of chromatin, including genome3d [] and tadkit []., we have discussed here the major steps in analyzing hi-c datasets and outlined currently available computational tools and methods to perform each step. although the diversity […]


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