TADLib statistics

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Citations per year

Number of citations per year for the bioinformatics software tool TADLib
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Tool usage distribution map

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Associated diseases

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Popular tool citations

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TADLib specifications

Information


Unique identifier OMICS_20804
Name TADLib
Alternative names HiTAD, Hierarchical TAD
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Version 0.3.1
Stability Stable
Maintained Yes

Subtool


  • HiTAD

Download


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Versioning


No version available

Additional information


http://xiaotaowang.github.io/TADLib/hitad.html

Publication for TADLib

TADLib citations

 (2)
library_books

A critical assessment of topologically associating domain prediction tools

2017
Nucleic Acids Res
PMCID: 5389712
PMID: 28334773
DOI: 10.1093/nar/gkx145

[…] ifying TADs from Hi-C data (,,,–), although not all of their software implementations are readily available. Currently available tools use different algorithms to detect TADs. Some programs allow for hierarchical TAD identification () or overlapping TAD boundaries (), while others do not. To date, these algorithms have not been benchmarked or compared to each other, leaving potential users in the […]

library_books

Structural heterogeneity and functional diversity of topologically associating domains in mammalian genomes

2015
Nucleic Acids Res
PMCID: 4551926
PMID: 26150425
DOI: 10.1093/nar/gkv684

[…] A TAD library (TADLib) to automatically calculate the parameter is coded by Python and freely available at https://pypi.python.org/pypi/TADLib. […]


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TADLib institution(s)
Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan, China
TADLib funding source(s)
Fundamental Research Funds for the Central Universities [2662015PY197, 2662016PY034]; National Natural Science Foundation of China [31200951].

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