TADLib specifications

Information


Unique identifier OMICS_20804
Name TADLib
Alternative names HiTAD, Hierarchical TAD
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Version 0.3.1
Stability Stable
Maintained Yes

Subtool


  • HiTAD

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Additional information


http://xiaotaowang.github.io/TADLib/hitad.html

Publication for TADLib

TADLib in publications

 (2)
PMCID: 5389712
PMID: 28334773
DOI: 10.1093/nar/gkx145

[…] tads from hi-c data (,,,–), although not all of their software implementations are readily available. currently available tools use different algorithms to detect tads. some programs allow for hierarchical tad identification () or overlapping tad boundaries (), while others do not. to date, these algorithms have not been benchmarked or compared to each other, leaving potential users […]

PMCID: 4551926
PMID: 26150425
DOI: 10.1093/nar/gkv684

[…] work can provide a useful tool to explore the biological functions underlying the structural characteristics of tads, especially when the epigenomic and tf binding signals are poor., a tad library (tadlib) to automatically calculate the parameter is coded by python and freely available at https://pypi.python.org/pypi/tadlib., supplementary data are available at nar online., funding for open […]


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TADLib institution(s)
Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan, China
TADLib funding source(s)
Fundamental Research Funds for the Central Universities [2662015PY197, 2662016PY034]; National Natural Science Foundation of China [31200951].

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