TagDust specifications

Information


Unique identifier OMICS_01095
Name TagDust
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C
License GNU General Public License version 3.0
Computer skills Advanced
Version 2.33
Stability Stable
Maintained Yes

Download


Versioning


Add your version

Maintainer


  • person_outline Timo Lassmann <>

TagDust articles

TagDust citations

 (2)
2016
PMCID: 4883752

[…] kit at the unc high throughput sequencing facility. pools of 24 multiplexed samples were sequenced per lane in a hiseq 2500 sequencer using 50 bp paired-end reads., rna-seq reads were filtered using tagdust and aligned to the reference mouse genome (mm9) with tophat using default parameters. reads aligning to rrna genes were removed. transcript abundance was estimated by computing rpkm using […]

2015
PMCID: 4613594

[…] a read length of 50 bases. after discarding sequences with ambiguous base calling, splitting sample reads by barcodes and removing linker sequences and artifactual linker adaptor sequences using tagdust,34 reads were of 26 to 42 bases in length. cage reads were mapped to mm9/ncbi37 using burrows-wheeler aligner (bwa) v0.5.6.35 only reads with mapq values over 10 and therefore mapping […]

TagDust institution(s)
RIKEN Center for Life Science Technologies (CLST), RIKEN Yokohama Institute, Yokohama, Japan; Telethon Kids Institute, The University of Western Australia, Subiaco, WA, Australia
TagDust funding source(s)
Supported by a Research Grant from the Japanese Ministry of Education, Culture, Sports, Science and Technology (MEXT) to the RIKEN Center for Life Science Technologies.

TagDust reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review TagDust