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TagFinder specifications

Information


Unique identifier OMICS_09687
Name TagFinder
Software type Package/Module
Interface Graphical user interface
Restrictions to use Academic or non-commercial use
Input data The recommended data import uses the commonly accepted chromatography interchange format NetCDF, which can be exported from almost any vendors’ GC-MS acquisition software.
Operating system Unix/Linux
Programming languages Java
Computer skills Medium
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Alexander Erban

Publications for TagFinder

TagFinder citations

 (76)
library_books

Rhizosphere Protists Change Metabolite Profiles in Zea mays

2018
Front Microbiol
PMCID: 5946010
PMID: 29780370
DOI: 10.3389/fmicb.2018.00857

[…] meter was set to 250°C. Gas chromatography-mass spectrometry data were subjected to baseline correction using MetAlign (); chromatographic deconvolution and quantification of compounds was done using TagFinder (). Using this latter program, a retention time index (RI) was calculated from the added n-alkanes. Metabolites were identified by comparison of RI-values and fragment masses to the Golm met […]

library_books

Metabolite related antidepressant action of diterpene ginkgolides in the prefrontal cortex

2018
PMCID: 5907891
PMID: 29713170
DOI: 10.2147/NDT.S161351

[…] GC-MS metabolite profiles were converted into the NetCdf file format using TagFinder for peak integration. Low-molecular-weight metabolites were identified as chromatographic peaks in total ion current chromatograms. The R software platform was used for data preprocessing, i […]

call_split

Primed primary metabolism in systemic leaves: a functional systems analysis

2018
Sci Rep
PMCID: 5760635
PMID: 29317679
DOI: 10.1038/s41598-017-18397-5
call_split See protocol

[…] öchengladbach, Germany). Chromatograms were obtained and baseline corrected by ChromaTOF software (Version 4.22, LECO, St. Joseph, USA). Identification of metabolites was manually supervised with the TagFinder software and the mass spectra and retention time index (RI) reference collection of the Golm Metabolome Database,. Peak heights were normalized to U-13C-sorbitol and fresh weights.Figure 1 […]

library_books

Characterization of the Primary Metabolome of Brachystegia boehmii and Colophospermum mopane under Different Fire Regimes in Miombo and Mopane African Woodlands

2017
Front Plant Sci
PMCID: 5735074
PMID: 29312388
DOI: 10.3389/fpls.2017.02130

[…] romatogram and mass spectra for each sample were analyzed using AMDIS (Automated Mass Spectral Deconvolution and Identification System) software (v 2.71). Primary metabolites were annotated using the TagFinder software, matching mass spectral and retention time index to the reference collection of authenticated standard substances from the Golm Metabolome Database (). The relative abundance of pri […]

library_books

Characterization of the Wheat Leaf Metabolome during Grain Filling and under Varied N Supply

2017
Front Plant Sci
PMCID: 5712589
PMID: 29238358
DOI: 10.3389/fpls.2017.02048

[…] ght-mass spectrometry (GC-TOF-MS) was performed as described previously (Lisec et al., ; Watanabe et al., ). Multiparallel chromatography data processing and compound identification were performed by TagFinder software (Luedemann et al., ) using reference spectra from the Golm Metabolome Database for compound identification (Kopka et al., ). […]

library_books

Rapid in situ 13C tracing of sucrose utilization in Arabidopsis sink and source leaves

2017
Plant Methods
PMCID: 5648436
PMID: 29075313
DOI: 10.1186/s13007-017-0239-6

[…] d metabolites or metabolite fragments after GC–EI–TOF–MS analyses were recorded as nominal mass isotopologue distributions and extracted by routine data processing of all recorded mass features using TagFinder software [, ]. The initial mass isotopologue distribution data were corrected for the naturally occurring 13C isotope abundance and the contributions of natural isotopes of other elements us […]

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TagFinder institution(s)
Department Prof L Willmitzer, Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
TagFinder funding source(s)
This work was supported by the Max Planck Society, the Bundesministerium für Bildung und Forschung (BMBF), grant PTJ-BIO/0312854 and the European META-PHOR project, FOOD-CT-2006-036220.

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