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TagFinder specifications

Information


Unique identifier OMICS_09687
Name TagFinder
Software type Package/Module
Interface Graphical user interface
Restrictions to use Academic or non-commercial use
Input data The recommended data import uses the commonly accepted chromatography interchange format NetCDF, which can be exported from almost any vendors’ GC-MS acquisition software.
Operating system Unix/Linux
Programming languages Java
Computer skills Medium
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Alexander Erban <>

Publications for TagFinder

TagFinder in publications

 (8)
PMCID: 5504741
PMID: 28693422
DOI: 10.1186/s12870-017-1062-y

[…] fractionated by an electron pulse of 70 ev. mass spectra were recorded at 20 scans per second with an m/z 35–800 scanning range. chromatograms and mass spectra were evaluated using chromatof 4.5 and tagfinder 4.1 software []. measurements were done for two conditions (d and control), two genotypes (wild-type and pip2;1 pip2;2 double mutant) and five replicates each in two experimental rounds […]

PMCID: 4905614
PMID: 27295368
DOI: 10.1186/s12859-016-1045-2

[…] according to recently published protocols [] adapted for sunflower tissue samples []. the chromatograms and spectra were evaluated using chromatof (leco corporation, st. joseph, míchigan, usa) and tagfinder []. ion spectra were compared to the golm metabolome database (http://gmd.mpimp-golm.mpg.de/). metabolite levels were normalized to fresh weight using ribitol as the internal control. […]

PMCID: 5041988
PMID: 27027236
DOI: 10.18632/oncotarget.8387

[…] different dilutions in order to accurately measure both high and relatively low abundant metabolites. the chromatograms and mass spectra were evaluated by chroma tof 1.6 (leco, st joseph, mi) and tagfinder 4.0 [] and metabolites were identified by comparison with mass spectral database [, ]. the gc-ms metabolite determinations were normalized to ribitol and protein content (μg) and presented […]

PMCID: 4750186
PMID: 26865323
DOI: 10.1186/s12870-016-0726-3

[…] (1 ml + 20 μl fame). after shaking for 30 min at 37 °c, the samples were analyzed by gc-ms (chromatof software, pegasus driver 1 · 61; leco). the chromatograms and mass spectra were evaluated using tagfinder software []. metabolite identification was manually supervised using the mass spectral and retention index collection of the golm metabolome database []. peak heights of the mass fragments […]

PMCID: 4762377
PMID: 26712823
DOI: 10.1093/jxb/erv516

[…] metabolite profiling was performed basically as described by . polar metabolites were extracted from 50mg of frozen leaf material and 150 µl of each extract was used for the analysis. tagfinder () was used for peak annotation and quantification with golm metabolome database (http://gmd.mpimp-golm.mpg.de; ) as a reference library. the parameters used for the peak annotation […]


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TagFinder institution(s)
Department Prof L Willmitzer, Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
TagFinder funding source(s)
This work was supported by the Max Planck Society, the Bundesministerium für Bildung und Forschung (BMBF), grant PTJ-BIO/0312854 and the European META-PHOR project, FOOD-CT-2006-036220.

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