Protocols

Tail Tools specifications

Information


Unique identifier OMICS_23580
Name Tail Tools
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Output data A report, Peaks called from poly(A) reads, Per-sample files, Read count and tail length statistics.
Output format HTML+ZIP,JSON,GFF,BAM,CSV
Operating system Unix/Linux
Programming languages Python, R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.3
Stability Stable
Requirements
limma, edgeR, python, samtools, bowtie, degust, bowtie2, nesoni, imagemagick, fitnoise, splitstree
Maintained Yes

Download


download.png

Versioning


No version available

Documentation


Maintainer


  • person_outline Paul Harrison

Additional information


https://pypi.python.org/pypi/tail-tools/

Tail Tools citation

call_split

Integration of Posttranscriptional Gene Networks into Metabolic Adaptation and Biofilm Maturation in Candida albicans

2015
PLoS Genet
PMCID: 4608769
PMID: 26474309
DOI: 10.1371/journal.pgen.1005590
call_split See protocol

[…] ording to the manufacturer’s instructions at the Gandel Charitable Trust Sequencing Centre (Monash University). The data were mapped to the reference genome: C. albicans SC5314 assembly 21; using the tail-tools pipeline version 0.31 and nesoni version 0.117) http://rnasystems.erc.monash.edu/. Figures were generated in R and Illustrator. The Venn diagram in was generated using US DOE Venn Diagram […]

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