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Taipan

Implements a read fragment assembly algorithm for de-novo genome of short reads generated by sequencing machines. Taipan uses a combination of the greedy extension and the overlap graph method. A performance evaluation using real Illumina datasets shows that Taipan can achieve assembly qualities comparable to the graph-based approaches within a reasonable execution time. The Taipan source code algorithm is freely available for download.

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Taipan classification

Taipan specifications

Software type:
Package/Module
Restrictions to use:
None
Programming languages:
C
Computer skills:
Advanced
Maintained:
Yes
Interface:
Command line interface
Operating system:
Unix/Linux
License:
GNU General Public License version 2.0
Stability:
Stable

Taipan distribution

versioning

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Taipan support

Maintainer

  • Dr. Bertil Schmidt <>

Credits

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Publications

Institution(s)

School of Computer Engineering, Nanyang Technological University, Singapore, Republic of Singapore; Department of Computer Science and Software Engineering, University of Melbourne, Melbourne, Australia; National ICT Australia, Victoria Research Lab, Victoria, Australia; School of Computer Science and IT, RMIT University, Melbourne, Australia

Link to literature

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