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TaLasso specifications

Information


Unique identifier OMICS_00417
Name TaLasso
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages MATLAB, R
Computer skills Advanced
Stability No
Maintained No

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Information


Unique identifier OMICS_00417
Name TaLasso
Interface Web user interface
Restrictions to use None
Programming languages MATLAB, R
Computer skills Basic
Stability No
Maintained No

Publication for TaLasso

TaLasso in publications

 (6)
PMCID: 5241943
PMID: 28133490
DOI: 10.1155/2017/8307530

[…] also developed a method called cnet to analysis the hela network. this network is also analyzed by lozano et al. [] and shojaie and michailidis []; they proposed 2 l1 penalized method, grplasso, and talasso to infer causal interactions., here we use the third experiment of whitfield [] as the previous studies, consisting of 47 samples. the results of cnet, grplasso, and talasso are taken […]

PMCID: 4238384
PMID: 25452690
DOI: 10.4137/CIN.S16348

[…] conditions. on the basis of this idea, some novel approaches have been developed to predict mirna targets by integrating expression data into sequence-based prediction. among them are genemir++,, talasso, hoctar, blasso, magia, and hctarget. they mainly use paired mirna and mrna expression data from the same set of samples to refine the sequence-based prediction results and obtain […]

PMCID: 3663800
PMID: 23717626
DOI: 10.1371/journal.pone.0064543

[…] additional approaches to analyze the two collectives of bladder cancer samples, the collective of healthy and tumor samples and the collective of invasive and non-invasive tumor tissue samples. the talasso web server was used to identify mirna-mrna interactions with the talasso method and genmir++ algorithm . the union between tarbase, mirecoreds 2010 and the intersection of mirandaxl, pictar […]

PMCID: 3527281
PMID: 23284279
DOI: 10.1371/journal.pcbi.1002830

[…] the prior information is provided in binary form (putative targets/non-targets) and the effect of multiple mirnas on a given mrna is inferred using an expectation maximization (em) algorithm. talasso , a recently published algorithm, combines mirna expression with prior database information to infer regulation of mrnas from a set of mirnas using a lasso regression method to determine […]

PMCID: 3526609
PMID: 23284698
DOI: 10.1371/journal.pone.0051480

[…] that the newer algorithm is able consider sequence-based information (not just presence or absence on a list of predictions) in determining the strength and likelihood of targeting interactions., talasso is another prominent algorithm that combines the presence of an mir-mrna pair in a targeting prediction database with expression data. it uses lasso regression, restricted to non-positive […]


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TaLasso institution(s)
Group of Bioinformatics, CEIT and TECNUN, University of Navarra, San Sebastian, Spain

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