Main logo
?
tutorial arrow
×
Create your own tool library
Bookmark tools and put favorites into folders to find them easily.

TANGO | Flexible taxonomic assignment of ambiguous sequencing reads

Provides taxonomic assignment a metagenomic dataset. TANGO classifies sequence reads according to their most probable taxonomic rank starting from a reference taxonomy and a set of sequence read alignments. It allows to interrogate multiple taxonomies and to compare taxonomic assignments that rely on competing classifications. The software is convenient for determine taxonomic assignment of ambiguous sequence reads.

User report

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

No review has been posted.

TANGO forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

TANGO classification

TANGO specifications

Unique identifier:
OMICS_01439
Interface:
Command line interface
Input data:
A taxonomic file such as GreenGenes, RDP or NCBI and a match files obtained from GEM software.
Operating system:
Unix/Linux
License:
MIT License
Stability:
Stable
Maintained:
Yes
Software type:
Application/Script
Restrictions to use:
None
Output data:
A result file with the assignation of each read to a node of the taxonomy.
Programming languages:
Perl, Python
Computer skills:
Advanced
Requirements:
Getopt::Long

TANGO distribution

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

TANGO support

Maintainer

  • Gabriel Valiente <>

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Institution(s)

Institute of Biomembranes and Bioenergetics, Consiglio Nazionale delle Ricerche, Bari, Italy; Department of Mathematics and Computer Science, Balearic Islands Health Research Institute (IdISBa), University of the Balearic Islands, Palma de Mallorca, Spain; Algorithms, Bioinformatics, Complexity and Formal Methods Research Group, Technical University of Catalonia, Barcelona, Spain

Funding source(s)

Supported, in part, by INMARE (H2020-BG-2014-2, GA 634486), EMBRIC (H2020-INFRADEV-1- 2014-1, GA 654008), EXCELERATE (H2020-INFRADEV-1-2015-1, GA 676559), PRIN 2010 (MIUR, Ministero dell’Istruzione, Universita e Ricerca of Italy), and by the Spanish Ministry of Economy and Competitiveness and European Regional Development Fund project DPI2015-67082-P (MINECO/FEDER).

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.