TAPPred pipeline

TAPPred specifications

Information


Unique identifier OMICS_05744
Name TAPPred
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


Publications for TAPPred

TAPPred IN pipelines

 (6)
2017
PMCID: 5450251
PMID: 28584450
DOI: 10.6026/97320630013094

[…] value of 0.5., to predict the candidate epitope(s) based on the processing of the peptide(s) in vivo, the transporter of antigenic peptides (tap) proteins' transport efficiency was tested using tappred server program [21]. the prediction approach used in this study was cascade support vector machines (svm), a prediction that is based on the sequence and features of amino acids […]

2017
PMCID: 5602290
PMID: 28943728
DOI: 10.6026/97320630013231

[…] hfrs. the epitopes that bind to class i hla supertypes that is also cleaved only at the flanking regions by human proteasomes, binding to tap efficiently was identified by the programs mappp and tappred respectively. this study enabled the prediction of mhc class i binding t- cell epitopes from hantaviruses towards development of a designer peptide vaccine., all available complete s and m […]

2017
PMCID: 5602290
PMID: 28943728
DOI: 10.6026/97320630013231

[…] the algorithms in the program were earlier implemented in fragpredict. minimum possibility for cleavage after a single residue and for cleavage of a fragment was set to a default value of 0.5., the tappred server program [18] was used to predict the candidate epitope(s) based on the predicted processing of the peptide(s) in vivo, the transporter of antigenic peptides (tap) proteins' transport […]

2016
PMCID: 4852757
PMID: 27147821
DOI: 10.4137/BBI.S38378

[…] the prediction of proteosomal cleavage h5n1 virus was analyzed by using paproc-i tools (http://www.paproc.de/), while the transport antigen presentation (tap) binding was predicted by using tappred server (http://www.imtech.res.in/raghava/tappred/).45,46 propred and netmhcpan servers were used to identify the bond region on the class i hla of the antigen.47,48, the selected epitopes […]

2016
PMCID: 4852757
PMID: 27147821
DOI: 10.4137/BBI.S38378

[…] virus was analyzed by using paproc-i tools (http://www.paproc.de/), while the transport antigen presentation (tap) binding was predicted by using tappred server (http://www.imtech.res.in/raghava/tappred/).45,46 propred and netmhcpan servers were used to identify the bond region on the class i hla of the antigen.47,48, the selected epitopes were further analyzed their conformation […]

TAPPred institution(s)
Institute of Microbial Technology, Chandigarh, India; UAMS, BRCII, Little Rock, AR, USA

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