TAPPred statistics

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Citations per year

Number of citations per year for the bioinformatics software tool TAPPred
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Tool usage distribution map

This map represents all the scientific publications referring to TAPPred per scientific context
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Protocols

TAPPred specifications

Information


Unique identifier OMICS_05744
Name TAPPred
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


Publications for TAPPred

TAPPred citations

 (9)
library_books

In Silico Validation of D7 Salivary Protein derived B and T cell Epitopes of Aedes aegypti as Potential Vaccine to Prevent Transmission of Flaviviruses and Togaviruses to Humans

2017
Bioinformation
PMCID: 5712781
PMID: 29225429
DOI: 10.6026/97320630013366

[…] TAPPred server program [] was used to predict the candidate epitope(s) based on the predicted processing of the peptide(s) in vivo, the transporter of antigenic peptides (TAP) proteins' transport effi […]

library_books

Short peptide epitope design from hantaviruses causing HFRS

2017
Bioinformation
PMCID: 5602290
PMID: 28943728
DOI: 10.6026/97320630013231

[…] sing HFRS. The epitopes that bind to Class I HLA supertypes that is also cleaved only at the flanking regions by human proteasomes, binding to TAP efficiently was identified by the programs MAPPP and TAPpred respectively. This study enabled the prediction of MHC Class I binding T- cell Epitopes from hantaviruses towards development of a designer peptide vaccine. […]

library_books

T cell epitopes predicted from the Nucleocapsid protein of Sin Nombre virus restricted to 30 HLA alleles common to the North American population

2017
Bioinformation
PMCID: 5450251
PMID: 28584450
DOI: 10.6026/97320630013094

[…] To predict the candidate epitope(s) based on the processing of the peptide(s) in vivo, the transporter of antigenic peptides (TAP) proteins' transport efficiency was tested using TAPPred server program []. The prediction approach used in this study was cascade Support Vector Machines (SVM), a prediction that is based on the sequence and features of amino acids and their proper […]

library_books

Immunoinformatics Approach in Designing Epitope based Vaccine Against Meningitis inducing Bacteria (Streptococcus pneumoniae, Neisseria meningitidis, and Haemophilus influenzae Type b)

2016
PMCID: 5091093
PMID: 27812281
DOI: 10.4137/DTI.S38458

[…] BI). The 3D structure of HLA was obtained from Research Collaboratory for Structural Bioinformatics (RCSB). Online and offline software including the latest version of BCPred, VaxiJen v2.0, PAPRoc I, TAPPRed,, Immune Epitope Database (IEDB) 3.0, PEP-FOLD, MOE 2009, and Chimera 1.9 were used in this study. […]

library_books

The Value of Online Algorithms to Predict T Cell Ligands Created by Genetic Variants

2016
PLoS One
PMCID: 5019413
PMID: 27618304
DOI: 10.1371/journal.pone.0162808

[…] Transport of peptides from the cytosol into the endoplasmic reticulum occurs via the TAP transporter and can be predicted by TAPPred (). Of the 60 different MiHA, 24 (40%) antigens were predicted as peptides with high binding affinity for TAP (>6), 31 (52%) antigens as peptides with intermediate binding affinity (>3) and 5 […]

library_books

Vaccine Design for H5N1 Based on B and T cell Epitope Predictions

2016
Bioinform Biol Insights
PMCID: 4852757
PMID: 27147821
DOI: 10.4137/BBI.S38378

[…] drifting. The prediction of proteosomal cleavage H5N1 virus was analyzed by using PAPROC-I tools (http://www.paproc.de/), while the transport antigen presentation (TAP) binding was predicted by using TAPPRED server (http://www.imtech.res.in/raghava/tappred/)., Propred and netMHCpan servers were used to identify the bond region on the class I HLA of the antigen., […]


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TAPPred institution(s)
Institute of Microbial Technology, Chandigarh, India; UAMS, BRCII, Little Rock, AR, USA

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