Tardis statistics

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Tardis specifications

Information


Unique identifier OMICS_20718
Name Tardis
Alternative name Toolkit for Automated and Rapid DIscovery of Structural variants
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Requirements
zlib, mrfast, htslib
Maintained Yes

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Maintainers


  • person_outline Fereydoun Hormozdiari <>
  • person_outline Can Alkan <>

Publications for Toolkit for Automated and Rapid DIscovery of Structural variants

Tardis in publications

 (42)
PMCID: 5818163
PMID: 29374102
DOI: 10.1212/WNL.0000000000004997

[…] support, government entities: 1. medical research council, funded enos trial, 2005-14, chief investigator 2. national institute of health research health technology assessment programme, funds tardis trial, 2009-17, chief investigator , 1. medical research council, funded enos trial, 2005-14, chief investigator 2. national institute of health research health technology assessment […]

PMCID: 5658709
PMID: 29263784
DOI: 10.12688/f1000research.12358.1

[…] from double antiplatelet therapy , , . that said, more is not necessarily better, and the recently reported (not yet published) triple antiplatelets for reducing dependency after ischemic stroke (tardis) study failed to show a benefit of adding dipyridamole to aspirin and clopidogrel for stroke risk reduction , . the results of tardis are not surprising since, although shown to be beneficial […]

PMCID: 5655126
PMID: 29089752
DOI: 10.2147/COPD.S144333

[…] therapy. there may even be beneficial effects of bbs in copd patients independent from cvs effects. indeed, in a scottish retrospective cohort study conducted in 2011 by short et al using the tardis database, use of bbs was associated with 22% reduction in all-cause mortality as well as reduction in need of emergency oral corticosteroid use and hospital admissions., there has previously […]

PMCID: 5590818
PMID: 28886031
DOI: 10.1371/journal.pone.0183380

[…] tardigrades were carried out within several projects, i.e. a) rotarad—rotifers, tardigrades, and radiation (richterius coronifer (richters, 1903) and milnesium tardigradum doyère, 1840), b) tardis—tardigrades in space (richterius coronifer and milnesium tardigradum) [], c) tarse—tardigrade resistance to space effects (paramacrobiotus richtersi (murray, 1911)) (all three […]

PMCID: 5633380
PMID: 28801508
DOI: 10.1534/g3.117.300141

[…] fire laboratory for reading the manuscript, k. artiles for technical support, and c. smith and m. bassik for valuable input. the use of high-performance computing resources of the firelab server and tardis is acknowledged. we express gratitude to the charles and ann johnson foundation for their support of myeloproliferative neoplasm research at stanford. this work is supported by grants […]


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Tardis institution(s)
Department of Computer Engineering, Bilkent University, Ankara, Turkey; UC-Davis Genome Center, University of California, Davis, CA, USA; Department of Computer Science, University of California, Davis, CA, USA; Department of Plant Biology, University of California, Davis, CA, USA; Bilkent-Hacettepe Health Sciences and Technologies Program, Ankara, Turkey; Department of Computer Science, ETH Zurich, Zurich, Switzerland; Department of Biochemistry and Molecular Medicine, University of California, Davis, CA, USA; MIND Institute, University of California, Davis, CA, USA
Tardis funding source(s)
Supported by a grant by TUBITAK (215E172), an EMBO Installation Grant (IG-2521) and the Computational Genomics Summer Institute funded by NIH grant GM112625.

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