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Protocols

Target Explorer specifications

Information


Unique identifier OMICS_24008
Name Target Explorer
Interface Web user interface
Restrictions to use None
Input data Sets of DNA sequences of various lengths believed to contain binding sites.
Computer skills Basic
Maintained No

Taxon


  • Invertebrates
    • Drosophila melanogaster

Maintainer


This tool is not available anymore.

Publication for Target Explorer

Target Explorer citations

 (17)
library_books

Analysis of Dark Current in BRITE Nanostellite CCD Sensors †

2018
PMCID: 5855356
PMID: 29415471
DOI: 10.3390/s18020479

[…] agency (csa), the university of toronto institute for aerospace studies (utias), the foundation for polish science & technology (fnitp mnisw), and national science centre (ncn)., the brightest target explorer (brite) is the pioneering nanosatellite mission dedicated for photometric observations of the brightest stars in the sky. the brite charge coupled device (ccd) sensors are poorly […]

library_books

Dysregulated miRNAs and their pathogenic implications for the neurometabolic disease propionic acidemia

2017
PMCID: 5516006
PMID: 28720782
DOI: 10.1038/s41598-017-06420-8

[…] mirtarbase (http://mirtarbase.mbc.nctu.edu.tw/), microrna.org (http://www.microrna.org/), diana tools-mirpath (http://diana.imis.athena-innovation.gr/dianatools/index.php?r=mirpath), ingenuity target explorer (http://targetexplorer.ingenuity.com) and ingenuity pathway analysis (ipa, ingenuity systems, qiagen, hilden, germany). mir2disease database (http://www.mir2disease.org/) was used […]

library_books

Metabolomic Characterizations of Liver Injury Caused by Acute Arsenic Toxicity in Zebrafish

2016
PMCID: 4788152
PMID: 26967897
DOI: 10.1371/journal.pone.0151225

[…] with reference to relevant mrna changes from a transcriptomic profile of arsenate exposure we previously obtained using the same exposure conditions []. the network structure was modified from ipa target explorer (https://targetexplorer.ingenuity.com/index.htm)., the observation of arsenic-induced glycogenolysis and glycolysis intermediates with concurrent increase in pyruvate […]

library_books

Precise stellar surface gravities from the time scales of convectively driven brightness variations

2016
PMCID: 4705039
PMID: 26767193
DOI: 10.1126/sciadv.1500654

[…] the intrinsic brightness variations are typically much smaller than the photon noise) or on most of the targets from missions such as microvariability and oscillations of stars (most) () and bright target explorer (brite) (), where it is more difficult to separate the contribution of photon noise from those of other sources of instrumental noise., here, we present a method to determine surface […]

library_books

Functional role of pyruvate kinase from Lactobacillus bulgaricus in acid tolerance and identification of its transcription factor by bacterial one hybrid

2015
PMCID: 4652205
PMID: 26581248
DOI: 10.1038/srep17024

[…] the positive transformants were sequenced and further analyzed with dnaman. the tf binding site was predicted using an online database regprecise (http://regprecise.lbl.gov/regprecise/index.jsp) and target explorer (http://te.cryst.bbk.ac.uk/)., in order to further investigate the role of ccpa in the regulation of pyk expression, l. bulgaricus cauh1 was respectively grown in mrss (mrs broth […]

library_books

Establishment of a Developmental Compartment Requires Interactions between Three Synergistic Cis regulatory Modules

2015
PMCID: 4607503
PMID: 26468882
DOI: 10.1371/journal.pgen.1005376

[…] []. the putative pnt, ap and sd binding sites were identified on the basis of a bioinformatics analysis combining data from the jaspar core insecta database (http://jaspar.genereg.net/) and the target explorer tool []., mutagenesis of the putative pnt, sd and ap binding sites was performed using the quikchange site-directed mutagenesis kit (stratagene). see for sequence of all primers used […]


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Target Explorer institution(s)
Department of Biochemistry and Molecular Biophysics, Columbia University College of Physicians and Surgeons, New York, NY, USA; Howard Hughes Medical Institute, Chevy Chase, MD, USA
Target Explorer funding source(s)
Supported by NSF grant #DBI-9904841 and by an NIH grant.

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