TSSV specifications

Unique identifier:
OMICS_13758
Software type:
Package/Module
Restrictions to use:
None
Input format:
FASTA
Output format:
FASTA
Programming languages:
Python
Computer skills:
Advanced
Stability:
Beta
Maintained:
Yes
Name:
Targeted characterisation of Short Structural Variation
Interface:
Command line interface
Input data:
Sequencing data, a library containing a list of loci of interest
Output data:
An overview of marker pair alignments, a detailed description of the identified alleles, their respective frequency per strand, supporting reads of each locus of interest in separate FASTA files
Operating system:
Unix/Linux, Mac OS, Windows
License:
MIT License
Version:
0.4.2
Source code URL:
https://git.lumc.nl/j.f.j.laros/tssv/

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TSSV distribution

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TSSV support

Maintainer

  • Seyed Yahya Anvar <>

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Publications

Institution(s)

Department of Human Genetic, Leiden University Medical Center, Leiden, Netherlands; Leiden Genome Technology Center, Leiden University Medical Center, Leiden, Netherlands; Netherlands Bioinformatics Centre, Leiden, Netherlands

Funding source(s)

This work was partially supported by the Centre for Molecular Systems Biology (CMSB), Duchenne Parent Project (the Netherlands) and a grant from the Netherlands Genomics Initiative (NGI)/Netherlands Organization for Scientific Research (NWO) within the framework of the Forensic Genomics Consortium Netherlands.

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