TargetExpress specifications

Information


Unique identifier OMICS_12005
Name TargetExpress
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 1.0
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus

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Maintainers


  • person_outline TargetExpress <>
  • person_outline Cei Abreu-Goodger <>

Information


Unique identifier OMICS_12005
Name TargetExpress
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus

Download


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Maintainers


  • person_outline TargetExpress <>
  • person_outline Cei Abreu-Goodger <>

Publication for TargetExpress

TargetExpress in publications

 (2)
PMCID: 5300892
PMID: 28147273
DOI: 10.1016/j.celrep.2016.12.093

[…] slit2 signaling by targeting mrnas that are locally translated in rgc gcs in response to slit2., to gain insight about mir-182 putative targets in axons, we use our recently developed algorithm, targetexpress (). we identified 1,064 potential mir-182 targets expressed in xenopus rgc growth cones () (see for details). pyruvate dehydrogenase kinase 4, a metabolic enzyme with no known activity […]

PMCID: 4886428
PMID: 27245778
DOI: 10.1186/s13073-016-0315-y

[…] seed matches in the 3′ utrs of genes. the genes with enriched 3'utrs were ordered according to the t-statistic (differential expression). prediction of functional mirna targets was performed by targetexpress (c ovando-vázquez, d lepe-soltero, c abreu-goodger, submitted). targetexpress is a support vector machine combination based on targetscan [] and microt-cds [] predictions […]


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TargetExpress institution(s)
Unidad de Genómica Avanzada (Langebio), Centro de Investigación y de Estudios Avanzados del IPN, Irapuato, Guanajuato, México
TargetExpress funding source(s)
Supported by Mexico’s National Council for Science and Technology [CONACyT Young Investigator grant number 133388]; and the Human Frontiers Science Program [grant number RGY0069/2014].

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