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Targetfinder.org specifications

Information


Unique identifier OMICS_06398
Name Targetfinder.org
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Ralf Mrowka <>

Publication for Targetfinder.org

Targetfinder.org in publications

 (6)
PMCID: 5675405
PMID: 29112983
DOI: 10.1371/journal.pone.0187776

[…] []., the v. album conserved and novel mirna candidates were searched against the v. album transcriptome database using psrobot (http://omicslab.genetics.ac.cn/psrobot/) and targetfinder (http://targetfinder.org/) with default parameters to identify potential mirna target genes. the target candidates were searched against protein database nr using blastx with e-values less than e-5 […]

PMCID: 5495461
PMID: 28672003
DOI: 10.1371/journal.pone.0180567

[…] n1 and n2 represent the total number of reads in the two compared samples, and x and y represent the numbers of sirna reads in the two samples., targetfinder (http://targetfinder.org/index.php/home) and psrobot (http://omicslab.genetics.ac.cn/psrobot/) were used to predict the target genes of all differentially expressed sirnas. in this study, the target genes […]

PMCID: 5499135
PMID: 28526728
DOI: 10.1534/g3.117.040808

[…] mirna target predicting proposed by and , the sequences of known mirnas were aligned to the rice genome. psrobot software (http://omicslab.genetics.ac.cn/psrobot/) and targetfinder software (http://targetfinder.org/) were used to identify the putative targets of differentially expressed known mirnas in all comparisons. combined with information on gene expression, the predicted targets […]

PMCID: 5376576
PMID: 28421097
DOI: 10.3389/fpls.2017.00463

[…] final product purified and subjected to high throughput sequencing., the publicly available cleaveland pipeline version 3.0.1 software package (addo-quaye et al., ) and target finder program (http://targetfinder.org/) (kiełbasa et al., ) were used to detect potentially sliced targets of the known and novel mirnas identified in srna sequencing. to account for inaccurate target cleavage […]

PMCID: 4705231
PMID: 26779240
DOI: 10.3389/fpls.2015.01212

[…] biological functions of them. in the present experiment, the potential targets of ponkan mirnas were predicted using the psrobot (http://omicslab.genetics.ac.cn/psrobot/) and targetfinder (http://targetfinder.org/)program (kiełbasa et al., ; wu et al., ). newly identified ponkan mirnas sequences were used as custom mirna sequences and c. clementina genome […]


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Targetfinder.org institution(s)
Max Planck Institute of Molecular Genetics, Berlin, Germany

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