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TargetMiner specifications

Information


Unique identifier OMICS_00419
Name TargetMiner
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for TargetMiner

TargetMiner in publications

 (17)
PMCID: 5605795
PMID: 29057256
DOI: 10.1155/2017/8737649

[…] 2% agarose gel and quantified using the fiji software (http://www.fiji.sc) []., predicted mirna-mrna interactions were retrieved from 9 different algorithms (diana-microt [], targetscan [], pita [], targetminer [], mirdb [], rna22 [], pictar [], and miranda []) using as input the sequences/ids for the mirna of interest. before merging the date, divergent database annotations were unified […]

PMCID: 5225423
PMID: 28074846
DOI: 10.1038/srep40019

[…] on the mirna sequences obtained from the mirbase database, and the mirna-specific primer sequences were listed in ., by integrating miranda, pictar, targetscan, diana-microt, mirecord, mirbase and targetminer databases, the targets that existed in more than 3 databases were selected as the target genes of demirs in early and late cp, respectively. for the target genes of demirs, a go […]

PMCID: 5133438
PMID: 27906131
DOI: 10.1098/rsob.160181

[…] proteins. numerous computational approaches for mirna target prediction have already been developed, such as targetscan, miranda, mirmap, diana-microt, targetboost, mitarget, mirtarget2, targetspy, targetminer, multimitar, nbmirtar and microt-ann []. because each algorithm has its own set of limitations, multiple computational algorithms are commonly used simultaneously to predict and identify […]

PMCID: 5239550
PMID: 27418141
DOI: 10.18632/oncotarget.10586

[…] genes of de-mirna were retrieved from the following mirna-target databases:diana-microt(dt) [], mirsvr [], pictar5(pt5) [], rna22 [], rnahybrid(rh) [], targetscan (ts) [], pita [], mirtarget2 [], targetminer [], miranda (mir) []. target genes were identified in at least 5 out of the 10 databases to decrease the number of false-positive results., we performed pathway and functional analyses […]

PMCID: 5226538
PMID: 27331623
DOI: 10.18632/oncotarget.10109

[…] (58%) of transcripts were called. other commonly used prediction programs (with default parameters applied) performed poorly when compared to the pd transcripts and miranda 3.3a; targetscan (27%), targetminer (23%), diana-microt-cds (19%), and mirdb (2%). in the absence of extensive data confirming the specificity of the interactions predicted by miranda (which was not the focus of this study) […]


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TargetMiner institution(s)
Machine Intelligence Unit, Indian Statistical Institute, Kolkata, India

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