TargetOrtho specifications

Information


Unique identifier OMICS_13080
Name TargetOrtho
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data Gene motifs and genes
Input format TXT, PWM
Output data Top-ranked site per gene, predicted binding sites in standard genome browsers
Output format HTML, TXT, BED
Operating system Unix/Linux
Programming languages C++, Python
License MIT License
Computer skills Advanced
Stability Stable
Requirements MEME, scipy, numpy, matplotlib
Source code URL https://codeload.github.com/loriglenwinkel/TargetOrtho/zip/master
Maintained Yes

Versioning


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Documentation


Maintainer


  • person_outline Oliver Hobert <>

Publication for TargetOrtho

TargetOrtho institution(s)
Department of Biochemistry and Molecular Biophysics, Howard Hughes Medical Institute, Columbia University Medical Center, New York, NY, USA
TargetOrtho funding source(s)
National Institutes of Health (R01NS039996-05, R01NS050266-03, 5T32DK007328-33)

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