TargetP protocols

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description
TargetP computational protocol

TargetP specifications

Information


Unique identifier OMICS_03897
Name TargetP
Interface Web user interface
Restrictions to use None
Input data A single sequence or several sequences.
Input format FASTA
Output data A prediction score for each possible outcome and a predicted localization.
Output format TXT
Computer skills Basic
Version 1.1
Stability Stable
Maintained Yes

Maintainers


  • person_outline Henrik Nielsen <>
  • person_outline TargetP Team <>
  • person_outline Olof Emanuelsson <>

Additional information


http://www.cbs.dtu.dk/services/doc/targetp-1.1.readme

Information


Unique identifier OMICS_03897
Name TargetP
Software type Application/Script
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux
Computer skills Advanced
Version 1.1b
Stability Stable
Registration required Yes
Maintained Yes

Versioning


Add your version

Maintainers


  • person_outline Henrik Nielsen <>
  • person_outline TargetP Team <>
  • person_outline Olof Emanuelsson <>

Additional information


http://www.cbs.dtu.dk/services/doc/targetp-1.1.readme

Publications for TargetP

TargetP IN pipelines

 (5)
2017
PMCID: 5447875
PMID: 28398557
DOI: 10.1093/jxb/erx113

[…] that the overall homology broadly ranged from 29.07% (between smil_00005410 and smil_00013745) to 99.64% (between smil_00008540 and smil_00008541). most of the gene locations determined using targetp prediction were unknown (see supplementary table s2). gene structure analysis of the 2ogd genes revealed that the number of exons ranged from 1 to 15; however, smil_00018082 and smil_00029434 […]

2016
PMCID: 4913111
PMID: 27379110
DOI: 10.3389/fpls.2016.00785

[…] score which corresponds to the confidence level for identification of protein, the protein abundance ratio (test vs. control) of differentially expressed protein, p-value identified for each hit and targetp1.1 predicted localization have been described in the supporting tables (table s2). the minimum expect value obtained by blastp analysis, mean percentage similarity of the protein, number […]

2015
PMCID: 4392696
PMID: 25914713
DOI: 10.3389/fpls.2015.00237

[…] use of the three-steps fractionation in the hybrid method led to a relative decrease of the number of identified non-cwps to 30%. altogether, analysis of the identified sequences with signalp and targetp designated 242 out of the 331 proteins identified in the fractions of the hybrid protocol (73.1%) as putative cell wall proteins; indicating that the latter protocol combines a good […]

2015
PMCID: 4539670
PMID: 26288653
DOI: 10.1186/s13068-015-0297-9

[…] hemicellulases and other proteins secreted in response to cellulose as identified in [8]. category d: proteins that traverse the secretory pathway as predicted using the signalp (score >0.5) and targetp (score = 1) algorithms. bfold-change relative to wild type for secreted protein as measured by bradford assay (n = 6). when deletions were available in both the mat a and mat a mating type […]

2015
PMCID: 4539670
PMID: 26288653
DOI: 10.1186/s13068-015-0297-9

[…] hemicellulases and other proteins secreted in response to cellulose as identified in [8]. category d: proteins that traverse the secretory pathway as predicted using the signalp (score >0.5) and targetp (score = 1) algorithms., bfold-change relative to wild type for secreted protein as measured by bradford assay (n = 6). when deletions were available in both the mat a and mat a mating type […]

TargetP institution(s)
Stockholm Bioinformatics Center, Albanova, Stockholm University, Stockholm, Sweden; Center for Biological Sequence Analysis, Technical University of Denmark, Lyngby, Denmark; Department of Biochemistry and Biophysics, Center for Biomembrane Research, Stockholm University, Stockholm, Sweden.

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