TargetP pipeline

TargetP specifications

Information


Unique identifier OMICS_03897
Name TargetP
Interface Web user interface
Restrictions to use None
Input data A single sequence or several sequences.
Input format FASTA
Output data A prediction score for each possible outcome and a predicted localization.
Output format TXT
Computer skills Basic
Version 1.1
Stability Stable
Maintained Yes

Taxon


  • Animals
  • Fungi
  • Plants
  • Protists

Maintainers


  • person_outline Henrik Nielsen <>
  • person_outline TargetP Team <>
  • person_outline Olof Emanuelsson <>

Additional information


http://www.cbs.dtu.dk/services/doc/targetp-1.1.readme

Information


Unique identifier OMICS_03897
Name TargetP
Software type Application/Script
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux
Computer skills Advanced
Version 1.1b
Stability Stable
Registration required Yes
Maintained Yes

Taxon


  • Animals
  • Fungi
  • Plants
  • Protists

Versioning


Add your version

Maintainers


  • person_outline Henrik Nielsen <>
  • person_outline TargetP Team <>
  • person_outline Olof Emanuelsson <>

Additional information


http://www.cbs.dtu.dk/services/doc/targetp-1.1.readme

Publications for TargetP

TargetP citations

 (2)
2015
PMCID: 4539670

[…] hemicellulases and other proteins secreted in response to cellulose as identified in [8]. category d: proteins that traverse the secretory pathway as predicted using the signalp (score >0.5) and targetp (score = 1) algorithms. bfold-change relative to wild type for secreted protein as measured by bradford assay (n = 6). when deletions were available in both the mat a and mat a mating type […]

2011
PMCID: 3037377

[…] using the peptidemass program (http://au.expasy.org/tools/peptide-mass.html)., the subcellular location of the identified proteins were predicted by the targetp program (www.cbs.dtu.dk/services/targetp) [25]. for those proteins without typical signal peptide sequences, secretomep software program (http://www.cbs.dtu.dk/services/secretomep-1.0) [33] was performed to inspect the non-classical […]

TargetP institution(s)
Stockholm Bioinformatics Center, Albanova, Stockholm University, Stockholm, Sweden; Center for Biological Sequence Analysis, Technical University of Denmark, Lyngby, Denmark; Department of Biochemistry and Biophysics, Center for Biomembrane Research, Stockholm University, Stockholm, Sweden.

TargetP reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review TargetP