Main logo
?
tutorial arrow
×
Create your own tool library
Bookmark tools and put favorites into folders to find them easily.

targetscan.Hs.eg.db

Predicts biological targets of miRNAs by searching for the presence of conserved 8mer and 7mer sites that match the seed region of each miRNA. Sites with mismatches in the seed region that are compensated by conserved 3' pairing are also identified. In mammals, predictions are ranked based on the predicted efficacy of targeting as calculated using the context scores of the sites. targetscan.Hs.eg.db provides detailed information about the latest version of the TargetScan miRNA target prediction database. This package is updated biannually.

User report

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

0 user reviews

No review has been posted.

targetscan.Hs.eg.db forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

targetscan.Hs.eg.db classification

targetscan.Hs.eg.db specifications

Software type:
Package/Module
Restrictions to use:
None
Programming languages:
R
Stability:
Stable
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Maintained:
Yes

targetscan.Hs.eg.db distribution

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

targetscan.Hs.eg.db support

Documentation

Link to literature

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.