Unique identifier OMICS_00790
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Version 0.6.1
Stability Stable
AnnotationDbi, methods, R(>=2.7.0), AnnotationDbi(>=1.18.3)
Maintained Yes


No version available

Documentation citations


miRCancerdb: a database for correlation analysis between microRNA and gene expression in cancer

BMC Res Notes
PMCID: 5822626
PMID: 29471873
DOI: 10.1186/s13104-018-3160-9

[…] analysis included TCGA public access data and the miRNA target TargetScan annotations. We accessed the TCGA data using the R package RTCGA. We accessed the TargetScan annotations using the R package […]


MicroRNA Expression in Abdominal and Gluteal Adipose Tissue Is Associated with mRNA Expression Levels and Partly Genetically Driven

PLoS One
PMCID: 3216936
PMID: 22102887
DOI: 10.1371/journal.pone.0027338

[…] n database was used to provide mRNA target predictions for each miRNA in the miRNA-mRNA analysis, here using predicted and conserved targets. TargetScan prediction was accessed through the R-package (version 0.2.0). 248 of the miRNAs we have profiled have predicted conserved targets, for each one of these we assessed if there was an association with their target mRNAs. We defi […] reviews

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