TargetScan

[…] several databases including, mirbase (http://microrna.sanger.ac.uk), mirnasnp (http://www.bioguo.org/mirnasnp/index.php), microsniper http://vm24141.virt.gwdg.de/services/microsniper/index.php), targetscan (http:// targetscan.org/vert_71/) in order to predict mirnas that target hiwi2 3′ utr region. the predicted mirnas are including hsa-mir-4686, hsa-mir-3686, hsa-mir-4652-3p, […]

[…] mirbase database (dennis et al., 2003; lewis, burge & bartel, 2005) and these mirna sequences were reorganized into fasta files. the target genes corresponding to the dems were predicted using targetscan software (lewis, burge & bartel, 2005), and the default parameters were adopted., the predicted target genes of the dems were mapped to david database (dennis et al., 2003), […]

[…] korea (nrf), funded by the ministry of science, ict and future planning (nrf-2015r1c1a1a02036313)., 1 https://www.ncbi.nlm.nih.gov/geo/ , 2 http://hannonlab.cshl.edu/fastx_toolkit/ , 3 http://www.targetscan.org , 4 http://software.broadinstitute.org/gsea/msigdb , the supplementary material for this article can be found online at: […]

[…] (anders et al., 2015). genes with low read count (<10) were filtered out to minimize false positives resulting from amplification. remaining genes were scanned for mirna target sites against the targetscan database (release 6.1). downstream analyses were performed in excel, and final gene lists underwent functional analysis using the gather (chang and nevins, 2006) the david fac tool (huang […]

[…] sequences (mirbase release version 21) with the module of quantifier.pl in mirdeep2 (default parameters) to quantify known mirnas., the conservation of known mirnas was described based on the targetscan definitions for “highly conserved”, “conserved”, “poorly conserved”, and “bovine-specific”24. a highly conserved mirna is conserved across most vertebrates; a conserved mirna is conserved […]