TargetScan specifications

Information


Unique identifier OMICS_00420
Name TargetScan
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/TargetScan

Taxon


  • Animals
    • Homo sapiens

Maintainer


  • person_outline TargetScan Team <>

TargetScan articles

TargetScan citations

 (13)
2018
PMCID: 5952853

[…] two relatively closely related species: d. simulans and d. yakuba. mir310s cds targets are conserved between d.melanogaster and d.simulans. transcripts targeted by mir310s were identified using the targetscan algorithm [7, 47, 87, 88]. 3’utr annotation was extracted from bdgp6.83. the whole genome alignments were dm6, drosim1, and droyak3 available at the ucsc genome browser. mirna expression […]

2018
PMCID: 5758705

[…] p value and the fdr value for each differentially expressed mirna was calculated by using the formula as previously described48., to predict the genes targeted by differentially expressed mirnas, targetscan 50 and miranda 3.3a were used to identify mirna binding sites. the overlaps predicted by both algorithms were used as predicted target genes. functional annotation of predicted mirna […]

2017
PMCID: 5573442

[…] (anders et al., 2015). genes with low read count (<10) were filtered out to minimize false positives resulting from amplification. remaining genes were scanned for mirna target sites against the targetscan database (release 6.1). downstream analyses were performed in excel, and final gene lists underwent functional analysis using the gather (chang and nevins, 2006) the david fac tool (huang […]

2017
PMCID: 5459504

[…] predicted sets of 3’-utrs were termed “orthologous 3’-utrs”, even though orthology is based on the underlying gene product to which they correspond. alignments of orthologous 3’-utr sets for the targetscan predictions were produced with muscle v3.8.31 [58], with default parameters. assemblies and gene sets of the three species used for accessing conservation of mirna target predictions […]

TargetScan institution(s)
Department of Breast Surgery , Cancer Hospital of China Medical University, Liaoning Cancer Hospital and Institute, Shenyang, China; Department of General Surgery, the Fourth Affiliated Hospital of China Medical University, Shenyang, China; Department of General Surgery, The 463th Affiliated Hospital of the Chinese People's Liberation Army, Shenyang, China

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