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TargetScore specifications

Information


Unique identifier OMICS_00421
Name TargetScore
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.19.0
Stability Stable
Requirements
gplots, Biobase, pracma, Matrix, TargetScoreData, GEOquery
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

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Documentation


Publication for TargetScore

TargetScore in publications

 (2)
PMCID: 5660761
PMID: 29158773
DOI: 10.1155/2017/9426280

[…] differentially expressed genes (degs) using david were extracted, followed by identifying the common pathways between ipas and david methods. next, mirnas prediction was implemented via calculating targetscore values with precomputed input (log fold change (fc), targetscan context score (tscs), and probabilities of conserved targeting (pct)). an mrpn construction was constructed using […]

PMCID: 4479227
PMID: 26110022
DOI: 10.1186/s13040-015-0052-6

[…] sufficiently large sample sets are unfortunately not always available. the platform supports the inference of mirna-mrna interactions using two complementary bioconductor methods, roleswitch [] and targetscore [], which account for these limitations., roleswitch is able to infer probabilities of mirna-mrna interactions from a single sample. the probabilities of mirna-mrna interaction signature […]

TargetScore institution(s)
Department of Computer Science, The Donnelly Centre, University of Toronto, Toronto, ON, Canada; Genetics and Genome Biology, SickKids Research Institute, Toronto, Ontario, Canada; Banting and Best Department of Medical Research and Department of Molecular Genetics, University of Toronto, Toronto, ON, Canada

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