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TASER specifications

Information


Unique identifier OMICS_24397
Name TASER
Alternative name Test of Association using SEquencing Reads
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A specification file, a control file, a region file, and an optional annotation.
Output data A file including information of the gene name, the number of loci in the gene after restricting to the annotated regions/sites, the number of loci that were screened in, the number of loci that were screened in and passed the threshold, the estimated number of SNVs, the p-value of the New-SB test, and the p-value of the New-STB test.
Operating system Unix/Linux
Programming languages C, C++
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes

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  • person_outline Yi-Juan Hu <>

Publication for Test of Association using SEquencing Reads

TASER in publications

 (26)
PMCID: 5813980
PMID: 29447295
DOI: 10.1371/journal.pone.0192932

[…] this data collection platform develops, it may be possible to expand from the narrow focus on lethal force into very specific types of force (e.g., the use of conducted energy devices, such as the taser, or the use of impact weapons, such as a baton), and later into other types of physical force, while encouraging agency conformity to reporting practices. a similar expansion of scope […]

PMCID: 5829936
PMID: 29389917
DOI: 10.15585/mmwr.ss6702a1

[…] legal intervention deaths include a small subset in which force was applied without clear lethal intent (e.g., during restraint or when applying force with a typically nondeadly weapon such as a taser [taser international, scottsdale, arizona]) or in which the death occurred while the person was fleeing capture. this category excludes legal executions. corresponding icd-10 codes included […]

PMCID: 5887060
PMID: 29644274
DOI: 10.1016/j.tcr.2017.10.001

[…] young adult male experienced penetrating globe injury due to a thomas a. swift electric rifle (taser). despite successful repair of the globe, the damage was profound. this case report explores the complex ways in which mechanical and electrical forces from a taser may impact the structural […]

PMCID: 5668427
PMID: 29097723
DOI: 10.1038/s41598-017-15062-9

[…] inflated type i errors, but discarding those samples with insufficient read depth can result in a loss of power (or, in this case, the loss of all controls). we therefore used the software package taser, which effectively re-calls variants in both cases and controls, allowing for systematic differences in read depth (and other factors), at the same time as constructing a test statistic., […]

PMCID: 5655857
PMID: 29065903
DOI: 10.1186/s13075-017-1433-7

[…] mean that clinical goals are probably to be preferred over mri goals at least in the short term. whether ultrasound can step into the gap remains an open question []. both the arctic [] and the taser [] studies have recently investigated whether ultrasound imaging can improve patient outcomes if used by clinicians to inform decision-making. both studies concluded that an ultrasound-driven […]


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TASER institution(s)
Department of Biostatistics and Bioinformatics, Emory University, Atlanta, GA, USA; Department of Biostatistics and Bioinformatics, Duke University, Durham, NC, USA; Centers for Disease Control and Prevention, Atlanta, GA, USA
TASER funding source(s)
Supported by National Institutes of Health grant R01GM116065-01A1 and Emory’s University Research Committee grant.

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