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TASIC specifications

Information


Unique identifier OMICS_17535
Name TASIC
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages MATLAB
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Ziv Bar-Joseph <>

Publication for TASIC

TASIC in publications

 (40)
PMCID: 5830442
PMID: 29491377
DOI: 10.1038/s41467-018-03282-0

[…] as the positive training set, and each other subtype as the positive test set, answering questions of the class, e.g., “how well does the zeisel_int1 hvg expression predict the identity of the tasic_smad3 subtype relative to all interneurons in the tasic data?”. each subtype ranges in incidence from 1 to 24% of the total number of cells within its own dataset, well within the range […]

PMCID: 5790772
PMID: 29434536
DOI: 10.3389/fnmol.2018.00014

[…] primary visual cortex has identified a vasoactive intestinal peptide (vip)-positive interneuron subpopulation that localizes to deep cortical layers and is characterized by the expression of gpc3 (tasic et al., ). altogether, these results indicate that hspgs have brain region- and cell type-specific expression patterns, supporting a possible involvement in synaptic specificity., […]

PMCID: 5801338
PMID: 29382412
DOI: 10.2807/1560-7917.ES.2018.23.4.16-00825

[…] public health centre of niš (southern serbia) between 2004 and 2008, did report the number of investigations making it possible to estimate the prevalence of giardia, which was 0.28% (). miladinovic-tasic and colleagues carried out several studies on giardiasis in different populations; the results from ones that examined healthy adults as a part of obligatory occupational health checks showed […]

PMCID: 5714881
PMID: 29249941
DOI: 10.3389/fncel.2017.00376

[…] to determine the gene expression pattern of individual neurons to reveal their molecular identity with unprecedented resolution (heiman et al., ; tang et al., ; macosko et al., ; zeisel et al., ; tasic et al., ). however, matching the transcriptional identity of individual neurons with their anatomical, morphological, or functional properties has been challenging., current methods […]

PMCID: 5684109
PMID: 29170632
DOI: 10.3389/fnana.2017.00102

[…] both classes shows a specific laminar distribution in the neocortex (jones, ; pla et al., ; molyneaux et al., ; leone et al., ; zilles and amunts, ; kwan et al., ; deboer et al., ; tasic et al., ), though inhibitory subtypes do not have laminar preference to the same extent as do excitatory neuronal subtypes (he et al., ). pyramidal neurons are glutamate-utilizing projection […]


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TASIC institution(s)
Computational Biology Department, Carnegie Mellon University, Pittsburgh, PA, USA; Center for Regenerative Medicine (CReM) of Boston University and Boston Medical Center, Boston, MA, USA; Machine Learning Department and Computational Biology Department, Carnegie Mellon University, Pittsburgh, PA, USA
TASIC funding source(s)
The work is supported in part by National Institute of Health [grants number 1R01HL128172 and 1U01HL122626-01] and by the National Science Foundation [grant number DBI-1356505].

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