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TassDB specifications

Information


Unique identifier OMICS_07828
Name TassDB
Alternative names TAndem Splice Site DataBase, TassDB2
Restrictions to use None
Version 2.0
Maintained Yes

Maintainer


  • person_outline Matthias Platzer

Publications for TAndem Splice Site DataBase

TassDB citations

 (3)
library_books

Alternative Splicing for Diseases, Cancers, Drugs, and Databases

2013
Sci World J
PMCID: 3674688
PMID: 23766705
DOI: 10.1155/2013/703568

[…] ation for principal isoform as the standard reference sequence for each gene.Some resources of alternative splicing have special features such as splice signals in EuSplice [], tandem splice sites in TassDB2 [], mutational evidence-based analysis in Alternative Splicing Mutation Database [], splicing proteins in SpliceAid 2 [], and transcription factors in TFClass []. However, the impacts of alter […]

library_books

Increased complexity of Tmem16a/Anoctamin 1 transcript alternative splicing

2011
BMC Mol Biol
PMCID: 3170211
PMID: 21824394
DOI: 10.1186/1471-2199-12-35

[…] proteins that they encode []. Use of the Tmem16a Δ3'exon 1 splice site, results in the exclusion of the last 3 nucleotides (GTG) of exon 1. The mouse Tmem16a genomic sequence was queried against the TassDB database of alternative tandem splice sites [], and the Δ3'exon 1 was recognized as tandem splicing at donor splice site with the motif GYNGYN. Indeed, a BLASTn search of the EST database revea […]

library_books

Selection against tandem splice sites affecting structured protein regions

2008
BMC Evol Biol
PMCID: 2279118
PMID: 18366714
DOI: 10.1186/1471-2148-8-89

[…] m site was considered as alternatively spliced if there is at least one EST/mRNA each that match the short and the long transcript. For Δ3 donor and acceptor sites, we downloaded EST information from TassDB []. For Δ6 and Δ9 tandem sites, we used BLAST against all ESTs and mRNAs. From the analyses, we omitted 35 introns where a Δ3/Δ6/Δ9 tandem splice event leads to the direct insertion of a stop c […]


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TassDB institution(s)
Genome Analysis, Leibniz Institute for Age Research - Fritz Lipmann Institute, Jena, Germany

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