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|Alternative names||TAndem Splice Site DataBase, TassDB2|
|Restrictions to use||None|
- person_outline Matthias Platzer
Publications for TAndem Splice Site DataBase
Alternative Splicing for Diseases, Cancers, Drugs, and Databases
[…] ation for principal isoform as the standard reference sequence for each gene.Some resources of alternative splicing have special features such as splice signals in EuSplice , tandem splice sites in TassDB2 , mutational evidence-based analysis in Alternative Splicing Mutation Database , splicing proteins in SpliceAid 2 , and transcription factors in TFClass . However, the impacts of alter […]
Increased complexity of Tmem16a/Anoctamin 1 transcript alternative splicing
[…] .nih.gov/BLAST/.Transmembrane regions were predicted using the CBS TMHMM Server v 2.0 http://www.cbs.dtu.dk/services/TMHMM/ and TMpred http://www.ch.embnet.org/software/TMPRED_form.html programs. The TAndem Splice Site DataBase (TassDB2) http://gen100.imb-jena.de/TassDB2/ was used to confirm alternative tandem splice sites in mouse and human Tmem16a. The Scansite database http://scansite.mit.edu/m […]
Selection against tandem splice sites affecting structured protein regions
[…] m site was considered as alternatively spliced if there is at least one EST/mRNA each that match the short and the long transcript. For Δ3 donor and acceptor sites, we downloaded EST information from TassDB . For Δ6 and Δ9 tandem sites, we used BLAST against all ESTs and mRNAs. From the analyses, we omitted 35 introns where a Δ3/Δ6/Δ9 tandem splice event leads to the direct insertion of a stop c […]
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