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Protocols

TASSER-Lite specifications

Information


Unique identifier OMICS_22480
Name TASSER-Lite
Alternative name Threading/ ASSembly/Refinement Lite
Interface Web user interface
Restrictions to use Academic or non-commercial use
Input data A protein sequence.
Input format FASTA
Computer skills Basic
Stability Beta
Maintained Yes

Maintainer


  • person_outline Jeffrey Skolnick

Publications for Threading/ ASSembly/Refinement Lite

TASSER-Lite citations

 (3)
library_books

Developing eThread Pipeline Using SAGA Pilot Abstraction for Large Scale Structural Bioinformatics

2014
Biomed Res Int
PMCID: 4066679
PMID: 24995285
DOI: 10.1155/2014/348725

[…] quired for the prediction of secondary structure that is a preprocessing task for THREADER. We summarize the ten tools in . While three-dimensional structures can be constructed by either MODELLER or TASSER-Lite using the output from eThread metathreading analysis, in this work, we only confine our focus on the metathreading analysis. The effective combination of multiple algorithms considerably e […]

library_books

Targeting Protein Protein Interactions for Parasite Control

2011
PLoS One
PMCID: 3083401
PMID: 21556146
DOI: 10.1371/journal.pone.0018381

[…] of the peripheral stalk on F-ATPase. O01427 is considered a druggable domain by Hopkins criteria and has two deletions relative to vertebrate homologs which were modeled for further characterization.TASSER-Lite was used to create the homology model because an ab initio approach was needed to model unresolved structure of the variable-length N-terminal end where the indels were located. The longes […]

call_split

aes, the gene encoding the esterase B in Escherichia coli, is a powerful phylogenetic marker of the species

2009
BMC Microbiol
PMCID: 2805673
PMID: 20040078
DOI: 10.1186/1471-2180-9-273
call_split See protocol

[…] Modelling of the Aes protein structure was based on comparison of the available models from MODBASE [] with models previously obtained using the Tasser-Lite homology modelling server [,]. Although some differences were observed between the models obtained by these two independent approaches, in particular in the N terminus region, the best mod […]

Citations

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TASSER-Lite institution(s)
Center for the Study of Systems Biology, School of Biology, Georgia Institute of Technology, Atlanta, GA, USA
TASSER-Lite funding source(s)
Supported by grant Nos. GM-347408 and GM-48835 of the Division of General Medical Sciences of the National Institutes of Health.

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