TASUKE protocols

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TASUKE specifications

Information


Unique identifier OMICS_08182
Name TASUKE
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
License MIT License
Computer skills Medium
Version 1.3.0
Stability Stable
Maintained Yes

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Maintainer


  • person_outline TASUKE <>

Information


Unique identifier OMICS_08182
Name TASUKE
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 1.3.0
Stability Stable
Maintained Yes

Maintainer


  • person_outline TASUKE <>

Publication for TASUKE

TASUKE in pipeline

2014
PMCID: 4131834
PMID: 24578372
DOI: 10.1093/dnares/dsu006

[…] (accession number sra023116). by using bwa, we aligned these sequences to the pseudomolecule sequences of nipponbare, kasalath, and 93-11 to examine the efficiency of chromosomal mapping. by using tasuke, a web-based application developed recently for visualization of large-scale re-sequencing data, we constructed a genome viewer to display the sequences of and the structural variations among […]


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TASUKE in publications

 (5)
PMCID: 5329020
PMID: 28293247
DOI: 10.3389/fpls.2017.00265

[…] instructions. clean reads have been mapped using soap2 on reference genomes: kasalath for rice and 70–15 for magnaporthe. annotated rice transcripts from kasalath genome were downloaded from the tasuke web-platform (kumagai et al., ; sakai et al., ). m. oryzae annotation datasets were downloaded from the magnaporthe comparative sequencing project at the broad institute (assembly release 8; […]

PMCID: 4958085
PMID: 27447712
DOI: 10.1186/s12284-016-0107-4

[…] genome sequencing data in a considerable number of rice cultivars and species. to facilitate efficient visualization of rapidly emerging large-scale sequencing data, a novel web-based browser, tasuke (http://tasuke.dna.affrc.go.jp/), with various functions to show the variation and read depth of multiple genomes, as well as annotations and snp data of hundreds of cultivars aligned […]

PMCID: 4752739
PMID: 26873587
DOI: 10.1186/s13071-016-1360-5

[…] killing assay. ki helped to draft the manuscript. ei participated in the study design and helped to draft the manuscript. all authors read and approved the final manuscript., we are grateful to tasuke ando for their help during work with the bacteria and to members of the laboratory of animal breeding and genetics, tohoku university graduate school of agricultural science for help […]

PMCID: 4265164
PMID: 25371505
DOI: 10.1093/jxb/eru419

[…] (). the protein motifs were searched using the interpro database (https://www.ebi.ac.uk/interpro/, accessed september 2014). additional genomic sequences of erebp and ring were obtained from the tasuke rice genome browser (http://rice50.dna.affrc.go.jp/, accessed september 2014), where the genomic sequences of 26 accessions from our mapping population were available ()., we tested the effect […]

PMCID: 4131834
PMID: 24578372
DOI: 10.1093/dnares/dsu006

[…] (accession number sra023116). by using bwa, we aligned these sequences to the pseudomolecule sequences of nipponbare, kasalath, and 93-11 to examine the efficiency of chromosomal mapping. by using tasuke, a web-based application developed recently for visualization of large-scale re-sequencing data, we constructed a genome viewer to display the sequences of and the structural variations among […]


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TASUKE institution(s)
Bioinformatics Research Unit, Agrogenomics Research Center, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, Japan

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