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TAXAassign

Attributes taxonomic assignments to nucleotide sequences at different levels by using NCBI's Taxonomy. TAXAassign also provides taxa abundances for a given set of sequences which can be gathered with externals sets to form a frequency table for an environmental context analysis.

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TAXAassign classification

TAXAassign specifications

Unique identifier:
OMICS_21514
Interface:
Command line interface
Input data:
A nucleotide sequence.
Programming languages:
Perl, Python, Shell (Bash)
Version:
0.4
Requirements:
GNU Parallel, Blastn, NCBI's nt database, BioSQL, sqlite3 and MySQL
Software type:
Application/Script
Restrictions to use:
None
Operating system:
Unix/Linux
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

TAXAassign distribution

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TAXAassign support

Documentation

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