TAXAassign statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool TAXAassign
info

Tool usage distribution map

This map represents all the scientific publications referring to TAXAassign per scientific context
info info

Associated diseases

info

Popular tool citations

chevron_left Prediction-based taxonomic classification chevron_right
Want to access the full stats & trends on this tool?

TAXAassign specifications

Information


Unique identifier OMICS_21514
Name TAXAassign
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A nucleotide sequence.
Operating system Unix/Linux
Programming languages Perl, Python, Shell (Bash)
Computer skills Advanced
Version 0.4
Stability Stable
Requirements
GNU Parallel, Blastn, NCBI's nt database, BioSQL, sqlite3 and MySQL
Maintained Yes

Download


download.png

Versioning


No version available

Documentation


TAXAassign citations

 (2)
library_books

A Large Scale Comparative Metagenomic Study Reveals the Functional Interactions in Six Bloom Forming Microcystis Epibiont Communities

2018
Front Microbiol
PMCID: 5919953
PMID: 29731741
DOI: 10.3389/fmicb.2018.00746

[…] Open reading frames (ORFs) of each genome bin were predicted by Prodigal v2.6.3 in metagenomic mode. We implemented taxonomic assignments of the genome bins using TAXAassign v.0.4 (https://github.com/umerijaz/taxaassign), with some modified codes to improve efficiency and accuracy. Using the improved script, we used deduced amino acid sequence information throu […]

library_books

The effect of DNA extraction methodology on gut microbiota research applications

2016
BMC Res Notes
PMCID: 4960752
PMID: 27456340
DOI: 10.1186/s13104-016-2171-7

[…] e then taxonomically classified against the RDP database using the standalone RDPclassifier v2.6 [] with the default–minWords option of 5. For species level assignment, we have used NCBI Taxonomy and TAXAassign (https://github.com/umerijaz/TAXAassign). To find the phylogenetic distances between OTUs, we first multisequence aligned the OTUs against each other using mafft v7.040 [] and then used Fas […]


Want to access the full list of citations?

TAXAassign reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review TAXAassign